4I5W
Crystal structure of yeast Ap4A phosphorylase Apa2 in complex with AMP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003877 | molecular_function | ATP:ADP adenylyltransferase activity |
A | 0004780 | molecular_function | sulfate adenylyltransferase (ADP) activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005634 | cellular_component | nucleus |
A | 0005737 | cellular_component | cytoplasm |
A | 0008796 | molecular_function | bis(5'-nucleosyl)-tetraphosphatase activity |
A | 0009117 | biological_process | nucleotide metabolic process |
A | 0009164 | biological_process | nucleoside catabolic process |
A | 0009165 | biological_process | nucleotide biosynthetic process |
A | 0016779 | molecular_function | nucleotidyltransferase activity |
A | 0016787 | molecular_function | hydrolase activity |
A | 0033699 | molecular_function | DNA 5'-adenosine monophosphate hydrolase activity |
B | 0003877 | molecular_function | ATP:ADP adenylyltransferase activity |
B | 0004780 | molecular_function | sulfate adenylyltransferase (ADP) activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005634 | cellular_component | nucleus |
B | 0005737 | cellular_component | cytoplasm |
B | 0008796 | molecular_function | bis(5'-nucleosyl)-tetraphosphatase activity |
B | 0009117 | biological_process | nucleotide metabolic process |
B | 0009164 | biological_process | nucleoside catabolic process |
B | 0009165 | biological_process | nucleotide biosynthetic process |
B | 0016779 | molecular_function | nucleotidyltransferase activity |
B | 0016787 | molecular_function | hydrolase activity |
B | 0033699 | molecular_function | DNA 5'-adenosine monophosphate hydrolase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PO4 A 401 |
Chain | Residue |
A | HIS152 |
A | HIS265 |
A | ALA266 |
A | LYS267 |
site_id | AC2 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE AMP A 402 |
Chain | Residue |
A | MET165 |
A | ASN277 |
A | THR279 |
A | MET284 |
A | LEU286 |
A | LYS288 |
A | AMP403 |
A | LEU50 |
A | ASN92 |
A | PHE94 |
A | VAL96 |
A | HIS100 |
site_id | AC3 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE AMP A 403 |
Chain | Residue |
A | PRO67 |
A | PHE68 |
A | LEU91 |
A | ASN92 |
A | LYS93 |
A | ASN148 |
A | GLY154 |
A | SER155 |
A | SER156 |
A | GLN157 |
A | HIS161 |
A | GLN163 |
A | AMP402 |
site_id | AC4 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE AMP B 401 |
Chain | Residue |
B | LEU75 |
B | LEU91 |
B | ASN92 |
B | LYS93 |
B | PHE94 |
B | LEU102 |
B | ASN148 |
B | GLY154 |
B | SER155 |
B | SER156 |
B | HIS161 |
B | GLN163 |
B | AMP402 |
site_id | AC5 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE AMP B 402 |
Chain | Residue |
B | ASN92 |
B | PHE94 |
B | VAL96 |
B | VAL97 |
B | HIS100 |
B | GLN163 |
B | MET165 |
B | THR279 |
B | MET284 |
B | LYS288 |
B | AMP401 |
B | HOH501 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Nucleophile => ECO:0000269|PubMed:23628156 |
Chain | Residue | Details |
A | HIS161 | |
B | HIS161 |
site_id | SWS_FT_FI2 |
Number of Residues | 16 |
Details | BINDING: BINDING => ECO:0000269|PubMed:23628156 |
Chain | Residue | Details |
A | LYS53 | |
B | ASN92 | |
B | ASN148 | |
B | GLY154 | |
B | GLN163 | |
B | ASN277 | |
B | MET284 | |
B | LYS288 | |
A | ASN92 | |
A | ASN148 | |
A | GLY154 | |
A | GLN163 | |
A | ASN277 | |
A | MET284 | |
A | LYS288 | |
B | LYS53 |