4I2Y
Crystal Structure of the genetically encoded calcium indicator RGECO1
Functional Information from GO Data
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 500 |
Chain | Residue |
A | ASP323 |
A | ASP325 |
A | ASP327 |
A | THR329 |
A | GLU334 |
A | HOH617 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 501 |
Chain | Residue |
A | THR365 |
A | GLU370 |
A | HOH611 |
A | ASP359 |
A | ASP361 |
A | ASP363 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 502 |
Chain | Residue |
A | ASP432 |
A | ASP434 |
A | ASP436 |
A | GLN438 |
A | GLU443 |
A | HOH614 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 503 |
Chain | Residue |
A | ASP396 |
A | ASP398 |
A | ASN400 |
A | TYR402 |
A | GLU407 |
A | HOH610 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA B 501 |
Chain | Residue |
B | ASP323 |
B | ASP325 |
B | ASP327 |
B | THR329 |
B | GLU334 |
B | HOH617 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA B 502 |
Chain | Residue |
B | ASP359 |
B | ASP361 |
B | ASP363 |
B | THR365 |
B | GLU370 |
B | HOH605 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA B 503 |
Chain | Residue |
B | ASP396 |
B | ASP398 |
B | ASN400 |
B | TYR402 |
B | GLU407 |
B | HOH623 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA B 504 |
Chain | Residue |
B | ASP432 |
B | ASP434 |
B | ASP436 |
B | GLN438 |
B | GLU443 |
B | HOH615 |
Functional Information from PROSITE/UniProt
site_id | PS00018 |
Number of Residues | 13 |
Details | EF_HAND_1 EF-hand calcium-binding domain. DKDGDGTITtkEL |
Chain | Residue | Details |
A | ASP325-THR337 | |
A | ASP398-HIS410 | |
A | ASP434-GLN446 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | MOD_RES: (Z)-2,3-didehydrotyrosine => ECO:0000269|PubMed:11209050 |
Chain | Residue | Details |
A | SER226 | |
B | SER226 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | CROSSLNK: 2-iminomethyl-5-imidazolinone (Gln-Gly) => ECO:0000269|PubMed:11209050 |
Chain | Residue | Details |
A | NRQ224 | |
A | LYS227 | |
B | NRQ224 | |
B | LYS227 |
site_id | SWS_FT_FI3 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00448, ECO:0000269|PubMed:23109337, ECO:0000269|PubMed:3145979, ECO:0007744|PDB:1G4Y, ECO:0007744|PDB:1NIW, ECO:0007744|PDB:2HQW, ECO:0007744|PDB:2YGG, ECO:0007744|PDB:3B32, ECO:0007744|PDB:3BXK, ECO:0007744|PDB:3BXL, ECO:0007744|PDB:3CLN, ECO:0007744|PDB:3IFK, ECO:0007744|PDB:3SJQ, ECO:0007744|PDB:4EHQ, ECO:0007744|PDB:4G27, ECO:0007744|PDB:4G28, ECO:0007744|PDB:4I2Y, ECO:0007744|PDB:4J9Y, ECO:0007744|PDB:4J9Z, ECO:0007744|PDB:4QNH |
Chain | Residue | Details |
A | ASP323 | |
B | GLU334 | |
A | ASP325 | |
A | ASP327 | |
A | THR329 | |
A | GLU334 | |
B | ASP323 | |
B | ASP325 | |
B | ASP327 | |
B | THR329 |
Chain | Residue | Details |
A | ASP359 | |
B | GLU370 | |
A | ASP361 | |
A | ASP363 | |
A | THR365 | |
A | GLU370 | |
B | ASP359 | |
B | ASP361 | |
B | ASP363 | |
B | THR365 |
site_id | SWS_FT_FI5 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00448, ECO:0000269|PubMed:23109337, ECO:0000269|PubMed:3145979, ECO:0007744|PDB:1NIW, ECO:0007744|PDB:2HQW, ECO:0007744|PDB:2YGG, ECO:0007744|PDB:3BXK, ECO:0007744|PDB:3BXL, ECO:0007744|PDB:3CLN, ECO:0007744|PDB:3EK4, ECO:0007744|PDB:3EK7, ECO:0007744|PDB:3EK8, ECO:0007744|PDB:3EKH, ECO:0007744|PDB:3EVR, ECO:0007744|PDB:3EVU, ECO:0007744|PDB:3SG2, ECO:0007744|PDB:3SG3, ECO:0007744|PDB:3SG4, ECO:0007744|PDB:3SG5, ECO:0007744|PDB:3SG6, ECO:0007744|PDB:3SG7, ECO:0007744|PDB:3SJQ, ECO:0007744|PDB:3WLC, ECO:0007744|PDB:3WLD, ECO:0007744|PDB:4EHQ, ECO:0007744|PDB:4I2Y, ECO:0007744|PDB:4RJD |
Chain | Residue | Details |
A | ASP396 | |
B | GLU407 | |
A | ASP398 | |
A | ASN400 | |
A | TYR402 | |
A | GLU407 | |
B | ASP396 | |
B | ASP398 | |
B | ASN400 | |
B | TYR402 |
site_id | SWS_FT_FI6 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00448, ECO:0000269|PubMed:23109337, ECO:0000269|PubMed:3145979, ECO:0007744|PDB:1NIW, ECO:0007744|PDB:2HQW, ECO:0007744|PDB:2YGG, ECO:0007744|PDB:3BXK, ECO:0007744|PDB:3BXL, ECO:0007744|PDB:3CLN, ECO:0007744|PDB:3EK7, ECO:0007744|PDB:3EK8, ECO:0007744|PDB:3EKH, ECO:0007744|PDB:3EVR, ECO:0007744|PDB:3EVU, ECO:0007744|PDB:3SG2, ECO:0007744|PDB:3SG3, ECO:0007744|PDB:3SG4, ECO:0007744|PDB:3SG5, ECO:0007744|PDB:3SG7, ECO:0007744|PDB:3SJQ, ECO:0007744|PDB:3WLC, ECO:0007744|PDB:3WLD, ECO:0007744|PDB:4EHQ, ECO:0007744|PDB:4I2Y, ECO:0007744|PDB:4RJD |
Chain | Residue | Details |
A | ASP432 | |
B | GLU443 | |
A | ASP434 | |
A | ASP436 | |
A | GLN438 | |
A | GLU443 | |
B | ASP432 | |
B | ASP434 | |
B | ASP436 | |
B | GLN438 |
site_id | SWS_FT_FI7 |
Number of Residues | 2 |
Details | MOD_RES: N6-acetyllysine; alternate => ECO:0000250|UniProtKB:P0DP23 |
Chain | Residue | Details |
A | LYS324 | |
B | LYS324 |
site_id | SWS_FT_FI8 |
Number of Residues | 2 |
Details | MOD_RES: Phosphothreonine; by CaMK4 => ECO:0000269|PubMed:12392717 |
Chain | Residue | Details |
A | THR347 | |
B | THR347 |
site_id | SWS_FT_FI9 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P0DP23 |
Chain | Residue | Details |
A | SER384 | |
B | SER384 |
site_id | SWS_FT_FI10 |
Number of Residues | 2 |
Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P0DP23 |
Chain | Residue | Details |
A | LYS397 | |
B | LYS397 |
site_id | SWS_FT_FI11 |
Number of Residues | 2 |
Details | MOD_RES: Phosphotyrosine => ECO:0007744|PubMed:22673903 |
Chain | Residue | Details |
A | TYR402 | |
B | TYR402 |
site_id | SWS_FT_FI12 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:22673903 |
Chain | Residue | Details |
A | GLY404 | |
B | GLY404 |
site_id | SWS_FT_FI13 |
Number of Residues | 2 |
Details | MOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P0DP23 |
Chain | Residue | Details |
A | THR413 | |
B | THR413 |
site_id | SWS_FT_FI14 |
Number of Residues | 2 |
Details | MOD_RES: N6-methyllysine; alternate => ECO:0000250|UniProtKB:P0DP23 |
Chain | Residue | Details |
A | LYS418 | |
B | LYS418 |
site_id | SWS_FT_FI15 |
Number of Residues | 2 |
Details | MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P0DP23 |
Chain | Residue | Details |
A | TYR441 | |
B | TYR441 |
site_id | SWS_FT_FI16 |
Number of Residues | 4 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P62157 |
Chain | Residue | Details |
A | LYS324 | |
B | LYS324 |