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4I1D

The crystal structure of an ABC transporter substrate-binding protein from Bradyrhizobium japonicum USDA 110

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 401
ChainResidue
APRO218
ATHR221
AHOH508
CTRP345

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 402
ChainResidue
APRO131
AGLU132

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 403
ChainResidue
AGLY195
AARG208

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 404
ChainResidue
ASER342
ATYR343
AALA344
AMSE341

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 405
ChainResidue
ALYS87
AARG109
AGLN113
AACT412

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 406
ChainResidue
ASER250
ALYS254
AILE305
AASP306
AARG324

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 407
ChainResidue
AASN162
ATHR262
ALYS337

site_idAC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 408
ChainResidue
ALYS87

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 409
ChainResidue
AARG176

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 410
ChainResidue
ATYR106
ATYR145
AARG180
AHIS182
AHOH502

site_idBC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACT A 411
ChainResidue
ATYR307

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT A 412
ChainResidue
ATRP83
ALYS87
AARG109
AGLN113
ASO4405

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT A 413
ChainResidue
AGLY105
ATYR106
AARG109
ATYR343

site_idBC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT A 414
ChainResidue
ASER152
AASN235

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT A 415
ChainResidue
APHE210
AARG357

site_idBC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACT A 416
ChainResidue
APHE261

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MLT A 417
ChainResidue
ATHR225
AGLY227
ATRP245
AARG248

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 401
ChainResidue
BSER250
BLYS254
BASP306
BARG324
BHOH520

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 402
ChainResidue
BTYR145
BARG180
BHOH508

site_idCC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 403
ChainResidue
BARG208

site_idCC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 404
ChainResidue
BARG176

site_idCC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 405
ChainResidue
BPHE210
BARG357

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 406
ChainResidue
BTRP83
BLYS87
BARG109
BGLN113

site_idCC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 407
ChainResidue
BGLU132
BARG135

site_idCC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 408
ChainResidue
BASN162
BTHR262
BTYR263
BLYS337
BACT414

site_idCC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 409
ChainResidue
BMSE341
BSER342
BTYR343
BALA344

site_idCC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 410
ChainResidue
BGLN50
BTHR271
BTYR307
BHOH559

site_idDC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 411
ChainResidue
BSER152
BLYS154
BASN235
BLYS258
BACT415
BHOH501

site_idDC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 412
ChainResidue
BALA279
BPRO280
BLEU282
BGLU283

site_idDC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT B 413
ChainResidue
BALA85
BTHR88
BHOH554

site_idDC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT B 414
ChainResidue
BPHE261
BGOL408

site_idDC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT B 415
ChainResidue
BASN235
BGOL411

site_idDC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MLT B 416
ChainResidue
BSER226
BGLY227
BALA228
BTRP245
BARG248
BTHR225

site_idDC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 401
ChainResidue
CPRO103
CTYR145
CARG180
CILE184

site_idDC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 C 402
ChainResidue
CTRP83
CLYS87
CARG109
CGLN113
CSO4407
CHOH560

site_idDC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 C 403
ChainResidue
CSER250
CLYS254
CILE305
CASP306
CARG324
CSO4409

site_idEC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 404
ChainResidue
AGLN363
CPHE210
CGLU214
CARG357
CPHE361

site_idEC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 405
ChainResidue
CARG208

site_idEC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 406
ChainResidue
AALA85
ATHR88
CGLN229
CHOH552

site_idEC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 407
ChainResidue
CARG109
CPRO349
CSO4402

site_idEC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C 408
ChainResidue
CASP159

site_idEC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 409
ChainResidue
CLYS254
CARG324
CSO4403

site_idEC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C 410
ChainResidue
CTHR262
CTYR263
CLYS337
CACT419

site_idEC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL C 411
ChainResidue
CHIS219
DLYS211

site_idEC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C 412
ChainResidue
CMSE341
CSER342
CTYR343
CALA344

site_idFC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C 413
ChainResidue
CTYR54
CGLU143
CTYR307
CMLT422

site_idFC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL C 414
ChainResidue
CTYR134
CALA335

site_idFC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT C 415
ChainResidue
AGLN50
ASER78
CGLN50
CILE79
CPRO80

site_idFC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT C 416
ChainResidue
CTYR106
CGLU352
CGLU355
CHOH560

site_idFC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT C 417
ChainResidue
CVAL90
CGLN113

site_idFC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT C 418
ChainResidue
CGLY105
CTYR106

site_idFC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT C 419
ChainResidue
CPHE261
CGOL410

site_idFC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT C 420
ChainResidue
CTYR151
CGLN153
CSER260

site_idFC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT C 421
ChainResidue
CPRO280
CLEU282
CGLU283

site_idGC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MLT C 422
ChainResidue
CSER226
CGLY227
CALA228
CARG248
CGOL413

site_idGC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 401
ChainResidue
BTHR221
DTRP345

site_idGC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 402
ChainResidue
DPRO103
DTYR145
DARG180
DILE184
DGOL413

site_idGC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 403
ChainResidue
DTRP83
DLYS87
DARG109
DGLN113

site_idGC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 D 404
ChainResidue
DARG208

site_idGC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 405
ChainResidue
DPRO131
DGLU132
DHOH550

site_idGC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 D 406
ChainResidue
DSER250
DLYS254
DILE305
DASP306
DARG324
DHOH538

site_idGC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 407
ChainResidue
DMSE341
DSER342
DTYR343
DALA344

site_idGC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 408
ChainResidue
DPHE210
DGLU214
DARG357
DPHE361

site_idHC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 409
ChainResidue
CLYS211
DHIS219

site_idHC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL D 410
ChainResidue
DASN162
DTHR262
DTYR263
DLYS337
DACT415

site_idHC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL D 411
ChainResidue
DGLN50
DGLU143
DTYR145
DTRP245
DTYR307

site_idHC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL D 412
ChainResidue
DALA133
DTYR134
DSER141
DSER270
DHOH572

site_idHC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL D 413
ChainResidue
DPRO103
DGLY105
DTYR106
DILE184
DTYR343
DSO4402
DHOH503

site_idHC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT D 414
ChainResidue
DLYS154
DLYS258

site_idHC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT D 415
ChainResidue
DPHE261
DGLN327
DGOL410

site_idHC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT D 416
ChainResidue
BSER78
DGLN50
DSER78
DILE79
DPRO80

site_idHC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MLT D 417
ChainResidue
DTHR225
DSER226
DGLY227
DALA228
DARG248

246333

PDB entries from 2025-12-17

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