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4HP8

Crystal structure of a putative 2-deoxy-d-gluconate 3-dehydrogenase from Agrobacterium Tumefaciens (target EFI-506435) with bound NADP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0008678molecular_function2-deoxy-D-gluconate 3-dehydrogenase activity
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0051287molecular_functionNAD binding
B0000166molecular_functionnucleotide binding
B0008678molecular_function2-deoxy-D-gluconate 3-dehydrogenase activity
B0016491molecular_functionoxidoreductase activity
B0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues38
DetailsBINDING SITE FOR RESIDUE NAP A 301
ChainResidue
AGLY16
APHE65
AALA66
AASN86
AALA87
AGLY88
AILE89
AILE137
AALA138
ATYR152
ALYS156
AASN18
APRO182
AGLY183
ATYR184
AILE185
ATHR187
AASN188
AASN189
ATHR190
AHOH403
AHOH434
ATHR19
AHOH457
AHOH471
AHOH491
AHOH511
AHOH512
AHOH520
AHOH564
AHOH578
AHOH676
AGLY20
ALEU21
AARG41
AARG42
AILE63
AASP64

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT A 302
ChainResidue
AILE90
AARG92
ATYR184
AHOH437
AHOH443

site_idAC3
Number of Residues40
DetailsBINDING SITE FOR RESIDUE NAP B 301
ChainResidue
BGLY16
BASN18
BTHR19
BGLY20
BLEU21
BARG41
BARG42
BILE63
BASP64
BPHE65
BALA66
BASN86
BALA87
BGLY88
BILE89
BILE137
BALA138
BTYR152
BLYS156
BPRO182
BGLY183
BILE185
BTHR187
BASN189
BTHR190
BHOH404
BHOH444
BHOH447
BHOH449
BHOH450
BHOH493
BHOH498
BHOH545
BHOH551
BHOH555
BHOH580
BHOH586
BHOH611
BHOH672
BHOH673

Functional Information from PROSITE/UniProt
site_idPS00061
Number of Residues29
DetailsADH_SHORT Short-chain dehydrogenases/reductases family signature. SllsfqggirVpsYTAAKHGVaGLTkLLA
ChainResidueDetails
ASER139-ALA167

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PDB entries from 2024-09-11

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