Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4HMA

Crystal structure of an MMP twin carboxylate based inhibitor LC20 in complex with the MMP-9 catalytic domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0004222molecular_functionmetalloendopeptidase activity
A0006508biological_processproteolysis
A0008237molecular_functionmetallopeptidase activity
A0008270molecular_functionzinc ion binding
A0031012cellular_componentextracellular matrix
B0004222molecular_functionmetalloendopeptidase activity
B0006508biological_processproteolysis
B0008237molecular_functionmetallopeptidase activity
B0008270molecular_functionzinc ion binding
B0031012cellular_componentextracellular matrix
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 301
ChainResidue
AHIS226
AHIS230
AHIS236
A0ZD306

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 302
ChainResidue
AHIS175
AASP177
AHIS190
AHIS203

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 303
ChainResidue
AGLY197
AGLN199
AASP201
AHOH445
AHOH446
AASP165

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 304
ChainResidue
AASP182
AGLY183
AASP185
ALEU187
AASP205
AGLU208

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA A 305
ChainResidue
AASP131
AASP206
AGLU208

site_idAC6
Number of Residues34
DetailsBINDING SITE FOR RESIDUE 0ZD A 306
ChainResidue
ALEU187
ALEU188
AALA189
ALEU222
AVAL223
AHIS226
AGLN227
AHIS230
AHIS236
ALEU243
ATYR245
APRO246
AMET247
ATYR248
AZN301
AGOL307
AHOH417
AHOH437
AHOH520
BLEU187
BLEU188
BALA189
BLEU222
BHIS226
BGLN227
BHIS230
BHIS236
BLEU243
BTYR245
BPRO246
BMET247
BTYR248
BZN501
BMLT506

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 307
ChainResidue
ATYR179
ALEU187
AHIS190
A0ZD306
AHOH440
BPRO240
BTYR245
BHOH615

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 308
ChainResidue
APHE110
AASN262
APEG317
AHOH457
AHOH479
AHOH518

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 309
ChainResidue
APEG314
AHOH559
AHOH584
AHOH587

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO A 310
ChainResidue
AGLU111
ALEU114
AGLY233
AASP235
AHOH577

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO A 311
ChainResidue
AASP207
AHOH471
AHOH529

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO A 312
ChainResidue
AGLY217
ATYR218
AHOH566

site_idBC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PEG A 313
ChainResidue
AGLN199

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG A 314
ChainResidue
AGOL309
AHOH557
AHOH559

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG A 315
ChainResidue
APHE156
ATHR157
BPGO510

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG A 316
ChainResidue
AHOH444
AHOH511
AHOH537

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG A 317
ChainResidue
AHOH594
ALYS184
AGOL308
AHOH518

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 501
ChainResidue
A0ZD306
BHIS226
BHIS230
BHIS236

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 502
ChainResidue
BHIS175
BASP177
BHIS190
BHIS203

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 503
ChainResidue
BASP165
BGLY197
BGLN199
BASP201
BHOH611
BHOH612

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 504
ChainResidue
BASP182
BGLY183
BASP185
BLEU187
BASP205
BGLU208

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 505
ChainResidue
BASP131
BASP206
BGLU208
BHOH681

site_idCC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MLT B 506
ChainResidue
A0ZD306
BGLU241
BTHR251
BPRO254
BPRO255
BHIS257
BPGO509
BHOH617

site_idCC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL B 507
ChainResidue
BPEG512
BHOH701

site_idCC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 508
ChainResidue
BHOH701
BHOH742
BHOH743
BHOH746

site_idCC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO B 509
ChainResidue
BTHR251
BGLY253
BPRO254
BMLT506

site_idCC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO B 510
ChainResidue
APEG315
BHOH714
BHOH739

site_idDC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO B 511
ChainResidue
BSER238
BHOH729

site_idDC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PEG B 512
ChainResidue
BGOL507
BHOH743

site_idDC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG B 513
ChainResidue
BASP259
BASN262
BGLY263
BHIS266
BHOH735

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000269|PubMed:12051944
ChainResidueDetails
AGLN227
BGLN227

site_idSWS_FT_FI2
Number of Residues24
DetailsBINDING: BINDING => ECO:0000269|PubMed:12051944
ChainResidueDetails
AASP131
AASP205
AASP206
AGLU208
BASP131
BASP165
BASP182
BGLY183
BASP185
BLEU187
BGLY197
AASP165
BGLN199
BASP201
BASP205
BASP206
BGLU208
AASP182
AGLY183
AASP185
ALEU187
AGLY197
AGLN199
AASP201

site_idSWS_FT_FI3
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:12051944, ECO:0000269|PubMed:12077439
ChainResidueDetails
AHIS175
BHIS190
BHIS203
BHIS226
BHIS230
BHIS236
AASP177
AHIS190
AHIS203
AHIS226
AHIS230
AHIS236
BHIS175
BASP177

site_idSWS_FT_FI4
Number of Residues4
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255
ChainResidueDetails
AASN120
AASN127
BASN120
BASN127

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon