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4HG9

Crystal structure of AhV_bPA, a basic PLA2 from Agkistrodon halys pallas venom

Functional Information from GO Data
ChainGOidnamespacecontents
A0004623molecular_functionphospholipase A2 activity
A0005509molecular_functioncalcium ion binding
A0005543molecular_functionphospholipid binding
A0005576cellular_componentextracellular region
A0006644biological_processphospholipid metabolic process
A0016042biological_processlipid catabolic process
A0016787molecular_functionhydrolase activity
A0035821biological_processmodulation of process of another organism
A0046872molecular_functionmetal ion binding
A0047498molecular_functioncalcium-dependent phospholipase A2 activity
A0050482biological_processarachidonic acid secretion
A0090729molecular_functiontoxin activity
B0004623molecular_functionphospholipase A2 activity
B0005509molecular_functioncalcium ion binding
B0005543molecular_functionphospholipid binding
B0005576cellular_componentextracellular region
B0006644biological_processphospholipid metabolic process
B0016042biological_processlipid catabolic process
B0016787molecular_functionhydrolase activity
B0035821biological_processmodulation of process of another organism
B0046872molecular_functionmetal ion binding
B0047498molecular_functioncalcium-dependent phospholipase A2 activity
B0050482biological_processarachidonic acid secretion
B0090729molecular_functiontoxin activity
C0004623molecular_functionphospholipase A2 activity
C0005509molecular_functioncalcium ion binding
C0005543molecular_functionphospholipid binding
C0005576cellular_componentextracellular region
C0006644biological_processphospholipid metabolic process
C0016042biological_processlipid catabolic process
C0016787molecular_functionhydrolase activity
C0035821biological_processmodulation of process of another organism
C0046872molecular_functionmetal ion binding
C0047498molecular_functioncalcium-dependent phospholipase A2 activity
C0050482biological_processarachidonic acid secretion
C0090729molecular_functiontoxin activity
D0004623molecular_functionphospholipase A2 activity
D0005509molecular_functioncalcium ion binding
D0005543molecular_functionphospholipid binding
D0005576cellular_componentextracellular region
D0006644biological_processphospholipid metabolic process
D0016042biological_processlipid catabolic process
D0016787molecular_functionhydrolase activity
D0035821biological_processmodulation of process of another organism
D0046872molecular_functionmetal ion binding
D0047498molecular_functioncalcium-dependent phospholipase A2 activity
D0050482biological_processarachidonic acid secretion
D0090729molecular_functiontoxin activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A 201
ChainResidue
ATYR28
AGLY30
AGLY32
AASP49

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE CIT A 202
ChainResidue
CHIS1
CLEU3
CLYS7
CASP72
AARG6
ALYS7
ALYS10
AHOH307
AHOH360

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE CIT A 203
ChainResidue
AHIS1
ALEU3
ALYS7
AASP72
AHOH307
AHOH336
AHOH378
CARG6
CLYS7
CLYS10

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE G3P A 204
ChainResidue
APHE5
AGLY30

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 201
ChainResidue
BTYR28
BGLY30
BGLY32
BASP49

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 202
ChainResidue
BARG6
BPRO18
BTYR22
BALA23
BHOH347

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA C 201
ChainResidue
CTYR28
CGLY30
CGLY32
CASP49

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE G3P C 202
ChainResidue
CLEU2
CPHE5
CGLY30
CHIS48

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL C 203
ChainResidue
CPRO37
CASP39
CARG43

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL C 204
ChainResidue
CALA101
CCYS105
CHOH306
CHOH332
CHOH348
CHOH358
CHOH364

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA D 201
ChainResidue
DTYR28
DGLY30
DGLY32
DASP49

Functional Information from PROSITE/UniProt
site_idPS00118
Number of Residues8
DetailsPA2_HIS Phospholipase A2 histidine active site. CCFvHDcC
ChainResidueDetails
ACYS44-CYS51

site_idPS00119
Number of Residues11
DetailsPA2_ASP Phospholipase A2 aspartic acid active site. VCECDKAAaIC
ChainResidueDetails
AVAL95-CYS105

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsACT_SITE: ACT_SITE => ECO:0000250|UniProtKB:P06859
ChainResidueDetails
AHIS48
AASP99
BHIS48
BASP99
CHIS48
CASP99
DHIS48
DASP99

site_idSWS_FT_FI2
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:9761847, ECO:0007744|PDB:1JIA
ChainResidueDetails
ATYR28
CGLY30
CGLY32
CASP49
DTYR28
DGLY30
DGLY32
DASP49
AGLY30
AGLY32
AASP49
BTYR28
BGLY30
BGLY32
BASP49
CTYR28

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PDB entries from 2024-07-17

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