4H5U
Structural insights into yeast Nit2: wild-type yeast Nit2
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005575 | cellular_component | cellular_component |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005739 | cellular_component | mitochondrion |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0016811 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides |
| A | 0043605 | biological_process | amide catabolic process |
| A | 0050406 | molecular_function | [acetyl-CoA carboxylase]-phosphatase activity |
| A | 0110050 | molecular_function | deaminated glutathione amidase activity |
| B | 0005575 | cellular_component | cellular_component |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005739 | cellular_component | mitochondrion |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0016811 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides |
| B | 0043605 | biological_process | amide catabolic process |
| B | 0050406 | molecular_function | [acetyl-CoA carboxylase]-phosphatase activity |
| B | 0110050 | molecular_function | deaminated glutathione amidase activity |
| C | 0005575 | cellular_component | cellular_component |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005739 | cellular_component | mitochondrion |
| C | 0016787 | molecular_function | hydrolase activity |
| C | 0016811 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides |
| C | 0043605 | biological_process | amide catabolic process |
| C | 0050406 | molecular_function | [acetyl-CoA carboxylase]-phosphatase activity |
| C | 0110050 | molecular_function | deaminated glutathione amidase activity |
| D | 0005575 | cellular_component | cellular_component |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005739 | cellular_component | mitochondrion |
| D | 0016787 | molecular_function | hydrolase activity |
| D | 0016811 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides |
| D | 0043605 | biological_process | amide catabolic process |
| D | 0050406 | molecular_function | [acetyl-CoA carboxylase]-phosphatase activity |
| D | 0110050 | molecular_function | deaminated glutathione amidase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A 401 |
| Chain | Residue |
| A | ASP87 |
| A | ASP116 |
| A | LEU122 |
| A | GOL403 |
| A | HOH579 |
| site_id | AC2 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL A 402 |
| Chain | Residue |
| A | HOH662 |
| A | HOH710 |
| B | ARG58 |
| B | TYR59 |
| A | ASP155 |
| A | ILE156 |
| A | HOH573 |
| A | HOH604 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL A 403 |
| Chain | Residue |
| A | HIS117 |
| A | PRO160 |
| A | GOL401 |
| A | HOH558 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL A 404 |
| Chain | Residue |
| A | ARG182 |
| A | ARG292 |
| A | ASN293 |
| A | PRO296 |
| A | HOH516 |
| B | GLU98 |
| B | LEU102 |
| site_id | AC5 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL B 401 |
| Chain | Residue |
| A | ARG58 |
| A | TYR59 |
| A | HOH514 |
| B | ASP155 |
| B | ILE156 |
| B | HOH519 |
| B | HOH550 |
| B | HOH569 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 402 |
| Chain | Residue |
| A | GLU98 |
| B | ARG292 |
| B | ASN293 |
| B | PRO296 |
| B | ASN299 |
| B | GOL403 |
| B | HOH508 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 403 |
| Chain | Residue |
| A | GLU98 |
| A | HOH519 |
| B | LYS163 |
| B | GLY185 |
| B | ALA186 |
| B | ARG292 |
| B | GOL402 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL B 404 |
| Chain | Residue |
| B | ARG209 |
| B | TRP262 |
| B | GLY263 |
| B | LYS264 |
| B | HOH577 |
| B | HOH700 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CAC B 405 |
| Chain | Residue |
| A | HIS240 |
| B | ILE68 |
| B | GLU124 |
| B | HOH553 |
| B | HOH599 |
| site_id | BC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL C 401 |
| Chain | Residue |
| B | ARG7 |
| B | LEU280 |
| B | HOH618 |
| C | GLY226 |
| C | MET227 |
| C | HOH558 |
| site_id | BC2 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL C 402 |
| Chain | Residue |
| A | ALA202 |
| A | HIS203 |
| C | ARG209 |
| C | TRP262 |
| C | GLY263 |
| C | LYS264 |
| C | HOH526 |
| C | HOH698 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL D 401 |
| Chain | Residue |
| D | THR196 |
| D | ILE197 |
| D | LYS198 |
| D | ARG249 |
| D | ARG250 |
| D | GLU251 |
| site_id | BC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL D 402 |
| Chain | Residue |
| D | ARG209 |
| D | TRP262 |
| D | GLY263 |
| D | LYS264 |
| D | HOH550 |
| D | HOH648 |
| D | HOH649 |
| site_id | BC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL D 403 |
| Chain | Residue |
| D | ARG182 |
| D | GLN216 |
| D | ARG292 |
| D | PRO296 |
| D | LEU297 |
| D | TRP298 |
Functional Information from PROSITE/UniProt
| site_id | PS01227 |
| Number of Residues | 21 |
| Details | UPF0012 Uncharacterized protein family UPF0012 signature. GsaICYDIrFPefslklrsmG |
| Chain | Residue | Details |
| A | GLY165-GLY185 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | ACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00054 |
| Chain | Residue | Details |
| A | GLU45 | |
| B | GLU45 | |
| C | GLU45 | |
| D | GLU45 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | ACT_SITE: Proton donor => ECO:0000255|PROSITE-ProRule:PRU00054 |
| Chain | Residue | Details |
| A | LYS127 | |
| B | LYS127 | |
| C | LYS127 | |
| D | LYS127 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | ACT_SITE: Nucleophile => ECO:0000255|PROSITE-ProRule:PRU00054, ECO:0000269|PubMed:23897470 |
| Chain | Residue | Details |
| A | CAF169 | |
| B | CAF169 | |
| C | CAF169 | |
| D | CAF169 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 8 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:23897470 |
| Chain | Residue | Details |
| A | ARG173 | |
| A | THR199 | |
| B | ARG173 | |
| B | THR199 | |
| C | ARG173 | |
| C | THR199 | |
| D | ARG173 | |
| D | THR199 |
