4H31
Crystal structure of anabolic ornithine carbamoyltransferase from Vibrio vulnificus in complex with carbamoyl phosphate and L-norvaline
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004585 | molecular_function | ornithine carbamoyltransferase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0006520 | biological_process | amino acid metabolic process |
A | 0006526 | biological_process | arginine biosynthetic process |
A | 0006591 | biological_process | ornithine metabolic process |
A | 0016597 | molecular_function | amino acid binding |
A | 0016740 | molecular_function | transferase activity |
A | 0016743 | molecular_function | carboxyl- or carbamoyltransferase activity |
B | 0004585 | molecular_function | ornithine carbamoyltransferase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006520 | biological_process | amino acid metabolic process |
B | 0006526 | biological_process | arginine biosynthetic process |
B | 0006591 | biological_process | ornithine metabolic process |
B | 0016597 | molecular_function | amino acid binding |
B | 0016740 | molecular_function | transferase activity |
B | 0016743 | molecular_function | carboxyl- or carbamoyltransferase activity |
C | 0004585 | molecular_function | ornithine carbamoyltransferase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0006520 | biological_process | amino acid metabolic process |
C | 0006526 | biological_process | arginine biosynthetic process |
C | 0006591 | biological_process | ornithine metabolic process |
C | 0016597 | molecular_function | amino acid binding |
C | 0016740 | molecular_function | transferase activity |
C | 0016743 | molecular_function | carboxyl- or carbamoyltransferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE NVA A 401 |
Chain | Residue |
A | ASN168 |
A | ASN169 |
A | ASP233 |
A | SER237 |
A | MET238 |
A | LEU276 |
A | CP402 |
A | HOH514 |
B | HOH503 |
site_id | AC2 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE CP A 402 |
Chain | Residue |
A | SER57 |
A | THR58 |
A | ARG59 |
A | THR60 |
A | ARG108 |
A | HIS135 |
A | GLN138 |
A | CYS275 |
A | LEU276 |
A | ARG320 |
A | NVA401 |
B | GLN84 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE PE5 A 403 |
Chain | Residue |
A | GLU307 |
A | HOH676 |
B | ALA120 |
B | PHE121 |
B | ARG186 |
B | THR215 |
B | GLU222 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PEG A 404 |
Chain | Residue |
A | GLU218 |
A | ASN219 |
A | VAL220 |
A | HOH573 |
A | HOH590 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PEG A 405 |
Chain | Residue |
A | ASP132 |
A | MET238 |
A | GLY239 |
A | GLU240 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PEG A 406 |
Chain | Residue |
A | LYS263 |
A | ASN267 |
A | PRO268 |
A | HIS310 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL A 407 |
Chain | Residue |
A | LEU13 |
A | PHE134 |
A | SER173 |
A | HOH505 |
site_id | AC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE PEG A 408 |
Chain | Residue |
A | THR215 |
A | GLU222 |
site_id | AC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PEG A 409 |
Chain | Residue |
A | GLU116 |
A | ASN260 |
A | GLN264 |
A | HOH575 |
site_id | BC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PEG A 410 |
Chain | Residue |
A | LYS253 |
A | GLN256 |
A | ASN258 |
A | HOH542 |
site_id | BC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL A 411 |
Chain | Residue |
A | ASN258 |
A | MET259 |
A | THR302 |
site_id | BC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE PEG A 412 |
Chain | Residue |
A | ARG96 |
A | GLN225 |
A | HOH617 |
C | PHE306 |
C | GLU307 |
C | SER311 |
C | PHE314 |
C | HOH612 |
site_id | BC4 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE PEG A 413 |
Chain | Residue |
A | ASP30 |
site_id | BC5 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE NVA B 401 |
Chain | Residue |
B | ASN168 |
B | ASN169 |
B | ASP233 |
B | SER237 |
B | MET238 |
B | LEU276 |
B | CP402 |
B | HOH515 |
C | HOH531 |
site_id | BC6 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE CP B 402 |
Chain | Residue |
B | SER57 |
B | THR58 |
B | ARG59 |
B | THR60 |
B | ARG108 |
B | HIS135 |
B | GLN138 |
B | CYS275 |
B | LEU276 |
B | ARG320 |
B | NVA401 |
C | GLN84 |
site_id | BC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PEG B 403 |
Chain | Residue |
B | ALA205 |
B | GLN209 |
B | LYS253 |
B | PHE294 |
B | HOH637 |
site_id | BC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL B 404 |
Chain | Residue |
B | LEU13 |
B | PHE134 |
B | SER173 |
site_id | BC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PEG B 405 |
Chain | Residue |
B | LEU262 |
B | ASN267 |
B | HIS310 |
site_id | CC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL B 406 |
Chain | Residue |
B | ASN258 |
B | MET259 |
B | THR302 |
B | GLU304 |
site_id | CC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PEG B 407 |
Chain | Residue |
A | GLU283 |
A | THR285 |
B | GLY86 |
site_id | CC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PEG B 408 |
Chain | Residue |
B | ALA156 |
B | ASP157 |
B | ILE158 |
B | GLY182 |
B | GLY211 |
site_id | CC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PEG B 409 |
Chain | Residue |
B | ALA29 |
B | LYS32 |
B | GLU148 |
site_id | CC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PE5 B 410 |
Chain | Residue |
B | ASP132 |
B | ARG167 |
B | MET238 |
B | GLY239 |
site_id | CC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PEG B 411 |
Chain | Residue |
B | SER17 |
B | THR18 |
B | LYS180 |
B | LYS253 |
site_id | CC7 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE NVA C 401 |
Chain | Residue |
A | HOH540 |
C | ASN168 |
C | ASN169 |
C | ASP233 |
C | SER237 |
C | MET238 |
C | LEU276 |
C | CP403 |
C | HOH511 |
site_id | CC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL C 402 |
Chain | Residue |
C | LEU13 |
C | SER173 |
site_id | CC9 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE CP C 403 |
Chain | Residue |
A | GLN84 |
C | SER57 |
C | THR58 |
C | ARG59 |
C | THR60 |
C | ARG108 |
C | HIS135 |
C | GLN138 |
C | CYS275 |
C | LEU276 |
C | ARG320 |
C | NVA401 |
site_id | DC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PE5 C 404 |
Chain | Residue |
C | ASP132 |
C | ARG167 |
C | MET238 |
C | HOH526 |
site_id | DC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE PEG C 405 |
Chain | Residue |
C | THR215 |
C | GLU222 |
site_id | DC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PEG C 406 |
Chain | Residue |
C | LEU262 |
C | ASN267 |
C | HIS310 |
site_id | DC4 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE PEG C 407 |
Chain | Residue |
A | GLN264 |
site_id | DC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL C 408 |
Chain | Residue |
C | ASN258 |
C | MET259 |
C | THR302 |
C | GLU304 |
site_id | DC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE PEG C 409 |
Chain | Residue |
C | SER237 |
C | MET238 |
C | GLY239 |
C | GLU240 |
C | HOH514 |
C | HOH546 |
C | HOH591 |
Functional Information from PROSITE/UniProt
site_id | PS00097 |
Number of Residues | 8 |
Details | CARBAMOYLTRANSFERASE Aspartate and ornithine carbamoyltransferases signature. FeKaSTRT |
Chain | Residue | Details |
A | PHE53-THR60 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000269|Ref.3, ECO:0000269|Ref.4, ECO:0007744|PDB:4H31, ECO:0007744|PDB:4JFR, ECO:0007744|PDB:4JHX, ECO:0007744|PDB:4JQO |
Chain | Residue | Details |
A | SER57 | |
C | ARG108 | |
C | HIS135 | |
C | CYS275 | |
A | ARG108 | |
A | HIS135 | |
A | CYS275 | |
B | SER57 | |
B | ARG108 | |
B | HIS135 | |
B | CYS275 | |
C | SER57 |
site_id | SWS_FT_FI2 |
Number of Residues | 3 |
Details | BINDING: BINDING => ECO:0000269|Ref.3, ECO:0000269|Ref.4, ECO:0007744|PDB:4H31, ECO:0007744|PDB:4JQO |
Chain | Residue | Details |
A | GLN84 | |
B | GLN84 | |
C | GLN84 |
site_id | SWS_FT_FI3 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000269|Ref.3, ECO:0000269|Ref.4, ECO:0007744|PDB:4H31, ECO:0007744|PDB:4JHX, ECO:0007744|PDB:4JQO |
Chain | Residue | Details |
A | ASN169 | |
C | ASP233 | |
C | SER237 | |
C | ARG320 | |
A | ASP233 | |
A | SER237 | |
A | ARG320 | |
B | ASN169 | |
B | ASP233 | |
B | SER237 | |
B | ARG320 | |
C | ASN169 |