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4H2U

Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with cognate carrier protein and ATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0006418biological_processtRNA aminoacylation for protein translation
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0004812molecular_functionaminoacyl-tRNA ligase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0006418biological_processtRNA aminoacylation for protein translation
B0016874molecular_functionligase activity
B0046872molecular_functionmetal ion binding
C0000035molecular_functionacyl binding
C0000036molecular_functionacyl carrier activity
C0005515molecular_functionprotein binding
C0005829cellular_componentcytosol
C0006633biological_processfatty acid biosynthetic process
C0009245biological_processlipid A biosynthetic process
D0000035molecular_functionacyl binding
D0000036molecular_functionacyl carrier activity
D0005515molecular_functionprotein binding
D0005829cellular_componentcytosol
D0006633biological_processfatty acid biosynthetic process
D0009245biological_processlipid A biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 401
ChainResidue
ACYS131
AGLU176
ACYS279
AHOH655
CPNS1000

site_idAC2
Number of Residues22
DetailsBINDING SITE FOR RESIDUE ATP A 402
ChainResidue
APHE172
AMET174
AASP215
ALYS235
AGLU237
AALA250
ACYS251
AMET252
ASER253
AALA281
AGLY283
AARG286
AMG403
AHOH598
AHOH635
AHOH649
AHOH651
AHOH656
AARG159
AGLU161
AARG168
ALEU169

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 403
ChainResidue
AARG159
AGLU161
AARG168
AATP402
AHOH555

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 401
ChainResidue
BCYS131
BGLU176
BCYS279
BHOH652
DPNS1000

site_idAC5
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ATP B 402
ChainResidue
BARG159
BGLU161
BARG168
BLEU169
BPHE172
BMET174
BLYS235
BGLU237
BALA250
BCYS251
BMET252
BSER253
BGLY283
BARG286
BMG404
BHOH580
BHOH639
BHOH642
BHOH649
BHOH650
BHOH651

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 403
ChainResidue
APRO303
AHOH544
BSER118
BHOH510
BHOH555
BHOH584

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG B 404
ChainResidue
BATP402
BHOH649
BHOH650

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT B 405
ChainResidue
BHIS29
BSER30
BHOH657

site_idAC9
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PNS C 1000
ChainResidue
ATYR132
AASP215
APHE217
AGLN229
AGLN232
AASN255
AHIS257
AZN401
AHOH655
AHOH678
CTHR41
CSER42

site_idBC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PNS D 1000
ChainResidue
BCYS131
BTYR132
BASP215
BPHE217
BGLN229
BGLN232
BHIS257
BARG258
BCYS279
BZN401
BHOH652
DSER42

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: O-(pantetheine 4'-phosphoryl)serine => ECO:0000255|PROSITE-ProRule:PRU00258
ChainResidueDetails
CSER42
BCYS131
BARG159
BGLU161
BARG168
BGLU176
BLYS235
BALA250
BCYS279
BARG286
DSER42
AGLU161
AARG168
AGLU176
ALYS235
AALA250
ACYS279
AARG286

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PDB entries from 2024-07-24

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