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4H1T

X-RAY Structure of the Complex VchUPh with Phosphate ion at 1.92A Resolution.

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004850molecular_functionuridine phosphorylase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0009116biological_processnucleoside metabolic process
A0009164biological_processnucleoside catabolic process
A0009166biological_processnucleotide catabolic process
A0016757molecular_functionglycosyltransferase activity
A0016763molecular_functionpentosyltransferase activity
A0044206biological_processUMP salvage
A0046872molecular_functionmetal ion binding
A0047847molecular_functiondeoxyuridine phosphorylase activity
B0003824molecular_functioncatalytic activity
B0004850molecular_functionuridine phosphorylase activity
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0009116biological_processnucleoside metabolic process
B0009164biological_processnucleoside catabolic process
B0009166biological_processnucleotide catabolic process
B0016757molecular_functionglycosyltransferase activity
B0016763molecular_functionpentosyltransferase activity
B0044206biological_processUMP salvage
B0046872molecular_functionmetal ion binding
B0047847molecular_functiondeoxyuridine phosphorylase activity
C0003824molecular_functioncatalytic activity
C0004850molecular_functionuridine phosphorylase activity
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0009116biological_processnucleoside metabolic process
C0009164biological_processnucleoside catabolic process
C0009166biological_processnucleotide catabolic process
C0016757molecular_functionglycosyltransferase activity
C0016763molecular_functionpentosyltransferase activity
C0044206biological_processUMP salvage
C0046872molecular_functionmetal ion binding
C0047847molecular_functiondeoxyuridine phosphorylase activity
D0003824molecular_functioncatalytic activity
D0004850molecular_functionuridine phosphorylase activity
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0009116biological_processnucleoside metabolic process
D0009164biological_processnucleoside catabolic process
D0009166biological_processnucleotide catabolic process
D0016757molecular_functionglycosyltransferase activity
D0016763molecular_functionpentosyltransferase activity
D0044206biological_processUMP salvage
D0046872molecular_functionmetal ion binding
D0047847molecular_functiondeoxyuridine phosphorylase activity
E0003824molecular_functioncatalytic activity
E0004850molecular_functionuridine phosphorylase activity
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0009116biological_processnucleoside metabolic process
E0009164biological_processnucleoside catabolic process
E0009166biological_processnucleotide catabolic process
E0016757molecular_functionglycosyltransferase activity
E0016763molecular_functionpentosyltransferase activity
E0044206biological_processUMP salvage
E0046872molecular_functionmetal ion binding
E0047847molecular_functiondeoxyuridine phosphorylase activity
F0003824molecular_functioncatalytic activity
F0004850molecular_functionuridine phosphorylase activity
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0009116biological_processnucleoside metabolic process
F0009164biological_processnucleoside catabolic process
F0009166biological_processnucleotide catabolic process
F0016757molecular_functionglycosyltransferase activity
F0016763molecular_functionpentosyltransferase activity
F0044206biological_processUMP salvage
F0046872molecular_functionmetal ion binding
F0047847molecular_functiondeoxyuridine phosphorylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 301
ChainResidue
AGLU48
AILE68
ASER72
BGLU48
BILE68
BSER72

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 302
ChainResidue
DTYR52
AGLU246
AARG249
DGLN31

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 303
ChainResidue
AARG177
CARG177
EARG177
ESO4303

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 304
ChainResidue
AEDO311
AHOH524
CPHE42
CTYR52

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 305
ChainResidue
AGLU35
ALEU36
AMET37
AEDO311
APEG320
CGLN31
CTYR52

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 306
ChainResidue
AARG174
AVAL175
AVAL176
AGLN180
AHOH464
AHOH578
CMET189
CEDO306

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 307
ChainResidue
APRO24
AGLY25
AASP26
AARG29
AEDO308
AHOH475
AHOH514
BARG47

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 308
ChainResidue
AARG90
ATHR93
AEDO307
AHOH561
BARG47

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 309
ChainResidue
AGLY104
AGLY147
AARG239
AHOH448

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 310
ChainResidue
AARG114
AASP116
ALEU120
AMET125
AARG178
AHOH580
FGLU126

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 311
ChainResidue
AGLU35
AMET37
APRO40
AEDO304
AEDO305
AHOH420
AHOH515

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH A 312
ChainResidue
AARG47
BASP26
BALA28

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 313
ChainResidue
AHOH429
AHOH444
AHOH508
AHOH537
FSO4303

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 314
ChainResidue
AGLY147
AHOH430
AHOH495
DVAL41
DARG53

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 315
ChainResidue
ALYS184
AGLU185
AHOH526
AHOH581
EGLN180

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 316
ChainResidue
APRO40
AVAL41
APHE42
AHOH422
EASN39

site_idBC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 317
ChainResidue
ALYS234
AALA238

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 318
ChainResidue
AILE219
ALEU233
ALYS234
AGLU237

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH A 319
ChainResidue
AGLN98
AHOH492
AHOH538

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PEG A 320
ChainResidue
CPHE42
CSER45
CHOH466
AASP38
AEDO305
AHOH510

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG A 321
ChainResidue
APRO99
AHIS100
AASN102

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG A 322
ChainResidue
AGLU12
AALA81
AGLN82
AGLY84
AARG86

site_idCC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG A 323
ChainResidue
ATHR4
AVAL5
APHE6
AGLY9
AHIS46

site_idCC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG A 324
ChainResidue
AARG167
ATYR168
AASP169
AARG222

site_idCC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PEG A 325
ChainResidue
AARG86

site_idCC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PEG A 326
ChainResidue
DGLU35
DLEU36
DMET37
DASP38
DASN39
DPRO40

site_idCC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 B 301
ChainResidue
AARG47
BGLY25
BARG29
BARG90
BVAL91
BGLY92
BTHR93
BHOH438
BHOH497

site_idDC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 B 302
ChainResidue
BARG86
BHOH534
BHOH551

site_idDC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 303
ChainResidue
BARG177
BHOH458
BHOH517
BHOH523
DARG177
DPEG307
DHOH423
FARG177

site_idDC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 304
ChainResidue
BLYS140
BGLN144
BEDO307

site_idDC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 305
ChainResidue
AASP26
AHOH590
BHIS46

site_idDC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE EDO B 306
ChainResidue
BGLY95
BPHE161
BGLN165
BPHE194
BGLU195
BMET196
BHOH425
BHOH482
BHOH497
BHOH563

site_idDC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 307
ChainResidue
BGLN144
BALA148
BTHR149
BVAL150
BSO4304
BHOH564

site_idDC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH B 308
ChainResidue
BGLY209
BHOH413
BHOH437

site_idDC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 309
ChainResidue
BALA28
BHOH477
BHOH501
BHOH561
EGLU246

site_idDC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 310
ChainResidue
BGLU55
BSER60

site_idEC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG B 311
ChainResidue
BLYS140
BHIS151
BMET152
CASP134

site_idEC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG B 312
ChainResidue
BGLN180
BGLY181
BLYS184
BHOH452
BHOH499
BHOH516
BHOH518

site_idEC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG B 313
ChainResidue
BLEU115
BARG178
BPHE179
BTRP186
BHOH431
BHOH511
CGLU126

site_idEC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PO4 C 301
ChainResidue
CGLY25
CARG29
CARG90
CVAL91
CGLY92
CTHR93
CHOH443
CHOH610
CHOH619
DARG47

site_idEC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE K C 302
ChainResidue
CGLU48
CILE68
CSER72
DGLU48
DILE68
DSER72

site_idEC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL C 303
ChainResidue
CGLY95
CARG167
CEDO307
CHOH406

site_idEC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 304
ChainResidue
CARG239
CLYS242

site_idEC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO C 305
ChainResidue
CMET183
CLYS184
CGLN187
CHOH411
CHOH413
CHOH441
CHOH450
FGLN224
FLYS225

site_idEC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C 306
ChainResidue
AGLN180
AEDO306
CLYS184
CGLU185
CHOH611
CHOH616

site_idFC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE EDO C 307
ChainResidue
CPHE161
CGLN165
CPHE194
CGLU195
CMET196
CCL303
CHOH610
CHOH617
CHOH618
CHOH619
DHOH585

site_idFC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO C 308
ChainResidue
BPHE133
BTHR137
CPHE133
CTHR137
CHOH437
CHOH614
CHOH627

site_idFC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO C 309
ChainResidue
BASP134
CLYS140
CGLN144

site_idFC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO C 310
ChainResidue
CASP169
CILE227
CHOH633
DGLN82

site_idFC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH C 311
ChainResidue
CVAL103
CTHR232
FPEG312

site_idFC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG C 312
ChainResidue
CHIS151
CHOH507
CHOH621

site_idFC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG C 313
ChainResidue
CASP38
CASN39
CPRO40
CHOH629
CHOH630
EPHE42
ETYR52

site_idFC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG C 314
ChainResidue
CTYR168
CGLY173
ELYS3

site_idFC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEG C 315
ChainResidue
CLYS225
FASP169
FTHR170
FPHE171
FTHR172
FGLY173
FHOH549
FHOH570

site_idGC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG C 316
ChainResidue
CARG178
CHOH439
DLEU120
DHOH402
DHOH454

site_idGC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG C 317
ChainResidue
CLEU36
CASP38
CLEU56
CARG249

site_idGC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 301
ChainResidue
CHOH455
DHIS46
DHOH444
DHOH572

site_idGC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO D 302
ChainResidue
DLYS140
DGLN144
DHOH520

site_idGC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D 303
ChainResidue
DVAL154
DMET189
DGLY190
EPHE127
EALA206
EHOH489

site_idGC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D 304
ChainResidue
DPRO24
DGLY25
DASP26
DARG29
DGLY92
DHOH589

site_idGC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO D 305
ChainResidue
DPHE161
DGLN165
DPHE194
DMET196
DHOH529
DHOH554
DHOH559
DHOH599

site_idGC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EOH D 306
ChainResidue
CARG47
DARG90
DTHR93
DHOH498
DHOH599

site_idGC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PEG D 307
ChainResidue
BGLN180
BSO4303
DARG177
DGLN180
DHOH423
FARG177

site_idHC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG D 308
ChainResidue
CGLN82
CHOH551
DASP169
DTHR170
EGLU226
EILE227
EHOH590

site_idHC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA E 301
ChainResidue
EGLU48
EILE68
ESER72
FGLU48
FILE68
FSER72

site_idHC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 E 302
ChainResidue
EGLY92
ETHR93
EHOH442
EHOH558
EHOH582
FARG47

site_idHC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 E 303
ChainResidue
AEDO303
CARG177
EARG177
EGLN180

site_idHC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO E 304
ChainResidue
EPHE6
EARG47
EHOH436
FHOH574

site_idHC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO E 305
ChainResidue
BHOH446
ETHR137
EALA141
EHOH601

site_idHC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO E 306
ChainResidue
ETHR94
EGLY95
EPHE161
EGLN165
EARG167
EPHE194
EHOH598

site_idHC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO E 307
ChainResidue
EPRO27
ESER45
EARG47
ETHR50
EHOH458

site_idHC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO E 308
ChainResidue
DMET125
EMET125
EGLU126
EHOH474

site_idIC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG E 309
ChainResidue
EGLU166
EARG167
ETYR168
EASP169
EMET183
EARG222
EHOH520

site_idIC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG E 310
ChainResidue
EHIS46
EARG47
FASP26

site_idIC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG E 311
ChainResidue
ELYS184
EGLN187
EHOH528

site_idIC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 F 301
ChainResidue
EARG47
FGLY25
FARG29
FARG90
FVAL91
FGLY92
FTHR93
FHOH464
FHOH613

site_idIC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL F 302
ChainResidue
FGLY95
FARG167
FILE220
FEDO304

site_idIC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 F 303
ChainResidue
AEDO313
AHOH500
FLYS140
FGLN144
FHOH528
FHOH531

site_idIC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO F 304
ChainResidue
FGLY95
FPHE161
FGLN165
FPHE194
FGLU195
FMET196
FCL302
FHOH613
FHOH617

site_idIC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO F 305
ChainResidue
CLYS184
CASP188
FASN102
FHOH423
FHOH612

site_idIC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO F 306
ChainResidue
FGLY209
FLEU210
FLYS211
FHOH467
FHOH492

site_idJC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO F 307
ChainResidue
EPHE6
FPRO228
FHIS230
FLEU233
FHOH566

site_idJC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO F 308
ChainResidue
EASP26
EHOH600
FHIS46

site_idJC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO F 309
ChainResidue
FALA13
FASN16

site_idJC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO F 310
ChainResidue
BARG177
BHOH495
FGLN180
FGLY181
FSER182
FGLU185
FHOH434

site_idJC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH F 311
ChainResidue
FGLY9
FVAL10
FASP14

site_idJC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG F 312
ChainResidue
CGLN224
CASP229
CEOH311
FTYR168
FHOH552

site_idJC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG F 313
ChainResidue
FGLY9
FHIS46
FHOH529

site_idJC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEG F 314
ChainResidue
ASER208
AGLY209
AHOH413
BARG174
FASP188
FGLY190
FPEG318
FHOH512

site_idJC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG F 315
ChainResidue
FPHE42
FSER45
FTHR50
FHOH523
FHOH551

site_idKC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG F 316
ChainResidue
FGLU35
FLEU36
FMET37

site_idKC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG F 317
ChainResidue
FGLN144
FGLU145
FHOH550
FHOH606

site_idKC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG F 318
ChainResidue
FGLN98
FGLN187
FASP188
FPEG314
FHOH577

Functional Information from PROSITE/UniProt
site_idPS01232
Number of Residues16
DetailsPNP_UDP_1 Purine and other phosphorylases family 1 signature. StGIGgPStSIaveEL
ChainResidueDetails
ASER65-LEU80

227111

PDB entries from 2024-11-06

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