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4GS5

The crystal structure of acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein from Dyadobacter fermentans DSM 18053

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0006631biological_processfatty acid metabolic process
A0016874molecular_functionligase activity
A0031956molecular_functionmedium-chain fatty acid-CoA ligase activity
Functional Information from PDB Data
site_idAC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE IOD A 402
ChainResidue
ASER45
AARG245

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE IOD A 403
ChainResidue
AGLN132
AEDO422

site_idAC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE IOD A 404
ChainResidue
AEDO414

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE IOD A 406
ChainResidue
ATHR337
ALYS339
AHOH645

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE IOD A 407
ChainResidue
AIOD408
AHIS41

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE IOD A 408
ChainResidue
AARG245
AASN248
AIOD407

site_idAC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE IOD A 410
ChainResidue
AALA300

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE IOD A 411
ChainResidue
AASN111
AASN137

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE IOD A 412
ChainResidue
ALEU9
AHOH650

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 413
ChainResidue
ALEU82
AASN83
AALA88

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 414
ChainResidue
ALEU151
AGLY153
ASER175
ASER183
AIOD404

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 415
ChainResidue
AARG36
AALA278
APHE279

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 416
ChainResidue
ASER45
AGLU180
ATHR229
AHOH561

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 417
ChainResidue
AALA329
ALYS330
ALYS348
ALEU349
AHOH649

site_idBC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO A 418
ChainResidue
AHOH506

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 419
ChainResidue
AGLY67
ASER71
ALEU72
AHOH559

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 420
ChainResidue
ALYS30
APHE38
AVAL39

site_idBC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 421
ChainResidue
ATYR20
AGLN23

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 422
ChainResidue
AVAL127
APRO128
AMSE129
AIOD403
AHOH527

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 423
ChainResidue
AALA64
AMSE65
ALYS68
APRO203
AHOH603

site_idCC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 424
ChainResidue
ALEU168
AMSE170
APRO171
AASN191
AGLY192
AGLU321
AHOH508
AHOH554
AHOH643

Functional Information from PROSITE/UniProt
site_idPS00455
Number of Residues12
DetailsAMP_BINDING Putative AMP-binding domain signature. VLHTSGSTGmPK
ChainResidueDetails
AVAL39-LYS50

226707

PDB entries from 2024-10-30

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