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4GP8

Structure of Recombinant Cytochrome ba3 Oxidase mutant Y133W+T231F from Thermus thermophilus

Replaces:  4ESL
Functional Information from GO Data
ChainGOidnamespacecontents
A0004129molecular_functioncytochrome-c oxidase activity
A0005886cellular_componentplasma membrane
A0006119biological_processoxidative phosphorylation
A0006811biological_processmonoatomic ion transport
A0009060biological_processaerobic respiration
A0016020cellular_componentmembrane
A0020037molecular_functionheme binding
A0046872molecular_functionmetal ion binding
A1902600biological_processproton transmembrane transport
B0004129molecular_functioncytochrome-c oxidase activity
B0005507molecular_functioncopper ion binding
B0005886cellular_componentplasma membrane
B0016020cellular_componentmembrane
B0046872molecular_functionmetal ion binding
B1902600biological_processproton transmembrane transport
C0004129molecular_functioncytochrome-c oxidase activity
C0005886cellular_componentplasma membrane
C0006811biological_processmonoatomic ion transport
C0016020cellular_componentmembrane
C1902600biological_processproton transmembrane transport
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CU A 601
ChainResidue
AHIS233
AHIS282
AHIS283
APER604

site_idAC2
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEM A 602
ChainResidue
ATYR65
AHIS72
AASN76
AALA77
ALEU132
ATRP133
APHE385
AHIS386
AALA390
ATHR394
AMET432
AMET435
AARG449
AARG450
AALA451
ALEU477
AHOH713
AHOH717
ALEU32
AGLY39
AGLN42
AALA43
ATYR46

site_idAC3
Number of Residues29
DetailsBINDING SITE FOR RESIDUE HAS A 603
ChainResidue
ATRP133
ATRP229
AVAL236
ATYR237
AHIS282
AHIS283
ASER309
ALEU310
AALA313
AALA317
ALEU320
ALEU353
APHE356
AGLY360
AGLY363
AASN366
AALA367
AASP372
AHIS376
AHIS384
APHE385
AGLN388
AVAL389
AARG449
APER604
AHOH701
AHOH721
AHOH742
AHOH743

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PER A 604
ChainResidue
AHIS233
AVAL236
AHIS283
ACU601
AHAS603

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE OLC A 605
ChainResidue
AVAL437
AHIS440
AOLC606
BOLC202
CPHE22
CGLY25
CALA28

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE OLC A 606
ChainResidue
ALEU354
AOLC605
BOLC202
CTHR18

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE OLC A 607
ChainResidue
AVAL158
ATYR161
AOLC616

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE OLC A 608
ChainResidue
ALEU147
APHE213
ALEU215
ATRP341
ATRP426
AOLC610
AOLC614
AOLC615
AOLC616

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE OLC A 609
ChainResidue
APRO292
ATHR293
AVAL300
APHE304

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE OLC A 610
ChainResidue
ALYS140
ATRP143
APHE213
ALEU430
AOLC608
AOLC617

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE OLC A 611
ChainResidue
ATRP111
AOLC614

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE OLC A 612
ChainResidue
AOLC613
ATYR161
AASP165
AARG168

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE OLC A 613
ChainResidue
ATRP167
AARG168
AGLY528
APHE531
AOLC612

site_idBC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE OLC A 614
ChainResidue
AGLY104
ALEU108
AALA464
APHE469
AOLC608
AOLC611
AOLC615
AOLC617

site_idBC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE OLC A 615
ChainResidue
AGLY47
AASN48
AMET112
AVAL151
AVAL471
ALEU472
AOLC608
AOLC614

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE OLC A 616
ChainResidue
AVAL216
AASP415
AOLC607
AOLC608

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE OLC A 617
ChainResidue
AARG337
ATRP341
AOLC610
AOLC614

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CUA B 201
ChainResidue
BHIS114
BCYS149
BGLN151
BCYS153
BHIS157
BMET160

site_idCC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE OLC B 202
ChainResidue
ATRP441
AOLC605
AOLC606
AHOH705
BARG141
BGLU144
BTYR145
CARG33

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE OLC B 203
ChainResidue
BALA13
BTYR14
BGLY17
BPHE21
BTYR35
COLC101

site_idCC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE OLC C 101
ChainResidue
BVAL28
BLEU32
BTYR35
BOLC203
CPHE31

Functional Information from PROSITE/UniProt
site_idPS00077
Number of Residues55
DetailsCOX1_CUB Heme-copper oxidase catalytic subunit, copper B binding region signature. WWFGHPiVyfwllpayaiiytilpkqaggklvsdpmarlafllflllstpvgf..HH
ChainResidueDetails
ATRP229-HIS283

site_idPS00078
Number of Residues49
DetailsCOX2 CO II and nitrous oxide reductase dinuclear copper centers signature. ViHgfhvegtninvevlpgevstvrytfkrpgeyrii......CnqyCglgHqnM
ChainResidueDetails
BVAL112-MET160

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues240
DetailsTransmembrane: {"description":"Helical","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsBinding site: {"description":"axial binding residue","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsCross-link: {"description":"1'-histidyl-3'-tyrosine (His-Tyr)"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues64
DetailsTransmembrane: {"description":"Helical"}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues129
DetailsTopological domain: {"description":"Periplasmic"}
ChainResidueDetails

Catalytic Information from CSA
site_idMCSA1
Number of Residues2
DetailsM-CSA 735
ChainResidueDetails
BPHE86electron shuttle
BPHE88electron shuttle
AHIS384electron shuttle
APHE385electron shuttle
AHIS386electron shuttle
AARG449electron shuttle
AARG450electron shuttle

239492

PDB entries from 2025-07-30

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