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4F9A

Human CDC7 kinase in complex with DBF4 and nucleotide

Functional Information from GO Data
ChainGOidnamespacecontents
A0004672molecular_functionprotein kinase activity
A0005524molecular_functionATP binding
A0006468biological_processprotein phosphorylation
B0003676molecular_functionnucleic acid binding
B0008270molecular_functionzinc ion binding
C0004672molecular_functionprotein kinase activity
C0005524molecular_functionATP binding
C0006468biological_processprotein phosphorylation
D0003676molecular_functionnucleic acid binding
D0008270molecular_functionzinc ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE ADP A 601
ChainResidue
AGLY67
AHIS139
ASER181
AASN182
ALEU184
AASP196
AMG602
AHOH701
AHOH702
AHOH705
AHOH712
ASER70
AHOH734
AVAL72
AALA88
ALYS90
AMET118
APRO135
ATYR136
ALEU137

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 602
ChainResidue
AASN182
AASP196
AADP601
AHOH701
AHOH702

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 401
ChainResidue
BCYS296
BCYS299
BHIS309
BHIS315

site_idAC4
Number of Residues20
DetailsBINDING SITE FOR RESIDUE ADP C 601
ChainResidue
CILE64
CGLY67
CSER70
CVAL72
CALA88
CLYS90
CMET118
CMET134
CPRO135
CTYR136
CLEU137
CHIS139
CSER181
CASN182
CLEU184
CASP196
CMG602
CHOH701
CHOH702
CHOH703

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C 602
ChainResidue
CASN182
CASP196
CADP601
CHOH701
CHOH702

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 401
ChainResidue
DCYS296
DCYS299
DHIS309
DHIS315

Functional Information from PROSITE/UniProt
site_idPS00107
Number of Residues27
DetailsPROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. IGEGTFSSVYlAtaqlqvgpeek.......IALK
ChainResidueDetails
AILE64-LYS90

site_idPS00108
Number of Residues13
DetailsPROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. IvHrDVKpsNFLY
ChainResidueDetails
AILE173-TYR185

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10027","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00600","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

238582

PDB entries from 2025-07-09

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