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4EYF

Crystal structure of NDM-1 bound to hydrolyzed benzylpenicillin

Functional Information from GO Data
ChainGOidnamespacecontents
A0008800molecular_functionbeta-lactamase activity
B0008800molecular_functionbeta-lactamase activity
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE PNK A 301
ChainResidue
ALEU65
AGLY219
AASN220
AHIS250
AZN302
AZN303
AHOH401
AHOH489
AHOH491
BTHR34
BGLY69
AMET67
ATRP93
AHIS122
AGLN123
AASP124
AHIS189
ACYS208
ALYS211

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 302
ChainResidue
AHIS120
AHIS122
AHIS189
APNK301
AHOH401

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 303
ChainResidue
AASP124
ACYS208
AHIS250
APNK301

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 304
ChainResidue
AGLU152
AASP223
AHOH475
BGLU227

site_idAC5
Number of Residues19
DetailsBINDING SITE FOR RESIDUE PNK B 301
ChainResidue
ATHR34
AGLY69
BLEU65
BMET67
BTRP93
BHIS122
BGLN123
BASP124
BHIS189
BCYS208
BLYS211
BGLY219
BASN220
BHIS250
BZN302
BZN303
BHOH401
BHOH427
BHOH441

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 302
ChainResidue
BASP124
BCYS208
BHIS250
BPNK301
BHOH401

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 303
ChainResidue
BHIS120
BHIS122
BHIS189
BPNK301
BHOH401

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 304
ChainResidue
AGLU227
BGLU152
BASP223
BHOH488

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22713171","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25815530","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22713171","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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