Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4EFB

Crystal structure of DNA ligase

Functional Information from GO Data
ChainGOidnamespacecontents
A0003911molecular_functionDNA ligase (NAD+) activity
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 401
ChainResidue
AGLY123
ALEU124
AALA125
AARG141
AARG202
AHOH532
AHOH655
AHOH661
AHOH715

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 402
ChainResidue
ALYS79
AARG129
AARG137
AHOH539
AHOH555
AHOH714

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE NMN A 403
ChainResidue
ATYR25
ATYR29
ATYR30
AVAL37
AASP39
ATYR42
AASP43
AARG158
AHOH503
AHOH729

site_idAC4
Number of Residues12
DetailsBINDING SITE FOR RESIDUE 0OW A 404
ChainResidue
ALEU89
AGLU118
ALEU119
ALYS120
AILE121
AARG141
AGLU175
ATYR227
ALYS291
APRO308
AHOH501
AHOH661

Functional Information from PROSITE/UniProt
site_idPS01055
Number of Residues30
DetailsDNA_LIGASE_N1 NAD-dependent DNA ligase signature 1. KIDGLAislrYenGvFvrgaTRGDGtvGEN
ChainResidueDetails
ALYS120-ASN149

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: N6-AMP-lysine intermediate => ECO:0000255|HAMAP-Rule:MF_01588
ChainResidueDetails
ALYS120

site_idSWS_FT_FI2
Number of Residues7
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01588, ECO:0000269|PubMed:15296738
ChainResidueDetails
ASER88
AGLU118
AARG141
AGLU175
ALYS291
ALYS315
AASP39

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon