Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

4E8F

Structural Basis for the Activity of a Cytoplasmic RNA Terminal U-transferase

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0000956	biological_process	nuclear-transcribed mRNA catabolic process
A	0002134	molecular_function	UTP binding
A	0003723	molecular_function	RNA binding
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0036450	biological_process	polyuridylation-dependent decapping of nuclear-transcribed mRNA
A	0050265	molecular_function	RNA uridylyltransferase activity
A	0060212	biological_process	negative regulation of nuclear-transcribed mRNA poly(A) tail shortening
A	1902373	biological_process	negative regulation of mRNA catabolic process
A	1990074	biological_process	polyuridylation-dependent mRNA catabolic process
A	1990817	molecular_function	poly(A) RNA polymerase activity
B	0000287	molecular_function	magnesium ion binding
B	0000956	biological_process	nuclear-transcribed mRNA catabolic process
B	0002134	molecular_function	UTP binding
B	0003723	molecular_function	RNA binding
B	0005737	cellular_component	cytoplasm
B	0005829	cellular_component	cytosol
B	0036450	biological_process	polyuridylation-dependent decapping of nuclear-transcribed mRNA
B	0050265	molecular_function	RNA uridylyltransferase activity
B	0060212	biological_process	negative regulation of nuclear-transcribed mRNA poly(A) tail shortening
B	1902373	biological_process	negative regulation of mRNA catabolic process
B	1990074	biological_process	polyuridylation-dependent mRNA catabolic process
B	1990817	molecular_function	poly(A) RNA polymerase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ACT A 500

Chain	Residue
A	ALA168
A	ASN171

site_id	AC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL B 500

Chain	Residue
B	ILE57
B	HOH630

site_id	AC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ACT B 501

Chain	Residue
A	ASP258
A	PRO261
B	SER90
B	LEU91
B	SER176

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"22608966","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22751018","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22885303","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24322298","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4E80","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4EP7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FH5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4NKT","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"22608966","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22885303","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4EP7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FH5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHY","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"22608966","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22885303","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4EP7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FH5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHY","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"22885303","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4FHP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHW","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"22608966","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22751018","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22885303","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24322298","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4E80","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4EP7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FH5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4NKT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4NKU","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"22608966","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22885303","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24322298","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4EP7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4NKT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4NKU","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PubMed","id":"22608966","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22751018","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22885303","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24322298","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4E80","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4EP7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FH5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4NKT","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI8
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"22608966","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22751018","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22885303","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24322298","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4E80","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4EP7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FH5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4NKT","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI9
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"22608966","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22751018","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22885303","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24322298","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4E80","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4EP7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FH5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4NKT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4NKU","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI10
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"22608966","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22885303","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24322298","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4EP7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FH5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FHW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4NKT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4NKU","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI11
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"22885303","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4FHX","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)