4DZ4
X-ray crystal structure of a hypothetical Agmatinase from Burkholderia thailandensis
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0008783 | molecular_function | agmatinase activity |
A | 0016787 | molecular_function | hydrolase activity |
A | 0016813 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines |
A | 0033389 | biological_process | putrescine biosynthetic process from arginine, using agmatinase |
A | 0046872 | molecular_function | metal ion binding |
B | 0008783 | molecular_function | agmatinase activity |
B | 0016787 | molecular_function | hydrolase activity |
B | 0016813 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines |
B | 0033389 | biological_process | putrescine biosynthetic process from arginine, using agmatinase |
B | 0046872 | molecular_function | metal ion binding |
C | 0008783 | molecular_function | agmatinase activity |
C | 0016787 | molecular_function | hydrolase activity |
C | 0016813 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines |
C | 0033389 | biological_process | putrescine biosynthetic process from arginine, using agmatinase |
C | 0046872 | molecular_function | metal ion binding |
D | 0008783 | molecular_function | agmatinase activity |
D | 0016787 | molecular_function | hydrolase activity |
D | 0016813 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines |
D | 0033389 | biological_process | putrescine biosynthetic process from arginine, using agmatinase |
D | 0046872 | molecular_function | metal ion binding |
E | 0008783 | molecular_function | agmatinase activity |
E | 0016787 | molecular_function | hydrolase activity |
E | 0016813 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines |
E | 0033389 | biological_process | putrescine biosynthetic process from arginine, using agmatinase |
E | 0046872 | molecular_function | metal ion binding |
F | 0008783 | molecular_function | agmatinase activity |
F | 0016787 | molecular_function | hydrolase activity |
F | 0016813 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines |
F | 0033389 | biological_process | putrescine biosynthetic process from arginine, using agmatinase |
F | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN A 401 |
Chain | Residue |
A | ASP159 |
A | HIS161 |
A | ASP242 |
A | ASP244 |
A | MN402 |
A | HOH739 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN A 402 |
Chain | Residue |
A | ASP242 |
A | MN401 |
A | HOH739 |
A | HIS135 |
A | ASP159 |
A | ASP163 |
site_id | AC3 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE EDO A 403 |
Chain | Residue |
A | ARG59 |
A | SER60 |
A | TYR291 |
A | HOH518 |
A | HOH575 |
C | ASP53 |
C | GLY61 |
C | ARG63 |
C | LEU64 |
C | ALA290 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 404 |
Chain | Residue |
A | GLU295 |
A | HOH525 |
A | HOH787 |
B | LEU64 |
D | PHE58 |
D | ARG59 |
site_id | AC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 405 |
Chain | Residue |
A | LEU64 |
A | SER67 |
A | ALA68 |
A | HOH524 |
A | HOH607 |
A | HOH775 |
B | HOH602 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 406 |
Chain | Residue |
A | SER19 |
A | LEU79 |
A | ASN80 |
A | ASP87 |
A | HOH627 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN B 401 |
Chain | Residue |
B | HIS135 |
B | ASP159 |
B | ASP163 |
B | ASP242 |
B | MN402 |
B | HOH752 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN B 402 |
Chain | Residue |
B | ASP159 |
B | HIS161 |
B | ASP242 |
B | ASP244 |
B | MN401 |
B | HOH752 |
site_id | AC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 403 |
Chain | Residue |
B | TRP165 |
B | TRP201 |
B | ASN202 |
B | ASP203 |
B | HOH613 |
E | ASN80 |
site_id | BC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B 404 |
Chain | Residue |
B | GLU78 |
B | HOH808 |
C | THR57 |
C | TRP165 |
C | THR256 |
site_id | BC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B 405 |
Chain | Residue |
B | SER19 |
B | ALA77 |
B | GLU78 |
B | LEU79 |
B | ASN80 |
B | ASP87 |
B | HOH670 |
site_id | BC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B 406 |
Chain | Residue |
B | THR57 |
B | HIS175 |
B | THR256 |
B | HOH807 |
E | GLU78 |
site_id | BC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B 407 |
Chain | Residue |
A | LEU64 |
B | GLU295 |
B | HOH513 |
B | HOH617 |
C | ARG59 |
site_id | BC5 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO B 408 |
Chain | Residue |
B | ARG59 |
B | SER60 |
B | TYR291 |
B | HOH525 |
D | GLY61 |
D | ARG63 |
D | LEU64 |
D | ALA290 |
D | HOH598 |
site_id | BC6 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO B 409 |
Chain | Residue |
B | PRO107 |
B | LEU108 |
B | ILE110 |
B | LYS111 |
B | TYR136 |
B | ASP171 |
B | LEU173 |
B | HOH592 |
B | HOH756 |
site_id | BC7 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO B 410 |
Chain | Residue |
B | GLU22 |
B | THR24 |
B | ALA77 |
B | GLU78 |
B | HOH545 |
B | HOH647 |
B | HOH695 |
B | SER20 |
site_id | BC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B 411 |
Chain | Residue |
A | ILE11 |
B | THR37 |
B | ARG38 |
B | ASP39 |
B | HOH584 |
B | HOH709 |
B | HOH802 |
site_id | BC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 412 |
Chain | Residue |
B | GLU295 |
B | HOH519 |
B | HOH590 |
B | HOH602 |
B | HOH609 |
B | HOH668 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN C 401 |
Chain | Residue |
C | ASP159 |
C | HIS161 |
C | ASP242 |
C | ASP244 |
C | MN402 |
C | HOH711 |
site_id | CC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN C 402 |
Chain | Residue |
C | HIS135 |
C | ASP159 |
C | ASP163 |
C | ASP242 |
C | MN401 |
C | HOH711 |
site_id | CC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO C 403 |
Chain | Residue |
C | GLU78 |
C | LEU79 |
C | ASN80 |
C | ASP87 |
C | HOH604 |
site_id | CC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO C 404 |
Chain | Residue |
B | ASN80 |
C | TRP201 |
C | ASN202 |
C | ASP203 |
C | HOH654 |
site_id | CC5 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO C 405 |
Chain | Residue |
A | GLY61 |
A | ARG63 |
A | LEU64 |
A | ALA290 |
A | HOH575 |
C | ARG59 |
C | SER60 |
C | TYR291 |
C | HOH503 |
site_id | CC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO C 406 |
Chain | Residue |
C | ARG127 |
C | TRP312 |
C | LYS316 |
C | HOH733 |
site_id | CC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO C 407 |
Chain | Residue |
C | LEU64 |
C | SER67 |
C | ALA68 |
C | HOH573 |
C | HOH597 |
C | HOH613 |
site_id | CC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO C 408 |
Chain | Residue |
C | GLU295 |
C | HOH588 |
C | HOH635 |
E | ARG59 |
F | LEU64 |
site_id | CC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO C 409 |
Chain | Residue |
C | PRO107 |
C | LEU108 |
C | ILE110 |
C | LYS111 |
C | TYR136 |
C | ASP171 |
C | LEU173 |
site_id | DC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO C 410 |
Chain | Residue |
B | ALA221 |
B | GLN266 |
B | HOH763 |
C | HIS217 |
C | HOH526 |
C | HOH578 |
C | HOH637 |
site_id | DC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN D 401 |
Chain | Residue |
D | ASP159 |
D | HIS161 |
D | ASP242 |
D | ASP244 |
D | MN402 |
D | HOH793 |
site_id | DC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN D 402 |
Chain | Residue |
D | HIS135 |
D | ASP159 |
D | ASP163 |
D | ASP242 |
D | MN401 |
D | HOH793 |
site_id | DC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO D 403 |
Chain | Residue |
D | ARG127 |
D | TRP312 |
D | ARG315 |
D | HOH744 |
D | HOH766 |
site_id | DC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO D 404 |
Chain | Residue |
D | GLY18 |
D | ASP90 |
site_id | DC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO D 405 |
Chain | Residue |
D | SER19 |
D | ALA77 |
D | LEU79 |
D | ASN80 |
D | ASP87 |
D | HOH602 |
site_id | DC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO D 406 |
Chain | Residue |
D | GLU78 |
D | HOH704 |
D | HOH794 |
F | TRP165 |
F | HOH694 |
site_id | DC8 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO D 407 |
Chain | Residue |
B | GLY61 |
B | ARG63 |
B | LEU64 |
B | ALA290 |
D | ARG59 |
D | SER60 |
D | TYR291 |
D | HOH510 |
D | HOH598 |
site_id | DC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO D 408 |
Chain | Residue |
D | LEU64 |
D | SER67 |
D | ALA68 |
D | HOH511 |
D | HOH618 |
D | HOH654 |
D | HOH692 |
site_id | EC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO D 409 |
Chain | Residue |
D | GLU295 |
D | HOH568 |
D | HOH620 |
E | LEU64 |
F | PHE58 |
F | ARG59 |
site_id | EC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO D 410 |
Chain | Residue |
A | ASN80 |
D | TRP201 |
D | ASN202 |
D | ASP203 |
D | HOH786 |
site_id | EC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN E 401 |
Chain | Residue |
E | HIS135 |
E | ASP159 |
E | ASP163 |
E | ASP242 |
E | MN402 |
E | HOH775 |
site_id | EC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN E 402 |
Chain | Residue |
E | ASP159 |
E | HIS161 |
E | ASP242 |
E | ASP244 |
E | MN401 |
E | HOH775 |
site_id | EC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO E 403 |
Chain | Residue |
E | ARG127 |
E | ARG315 |
E | LYS316 |
E | HOH710 |
E | HOH822 |
site_id | EC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO E 404 |
Chain | Residue |
E | GLU78 |
E | LEU79 |
E | ASN80 |
E | ASP87 |
E | HOH641 |
E | HOH769 |
site_id | EC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO E 405 |
Chain | Residue |
C | ASN80 |
E | TRP201 |
E | ASN202 |
E | ASP203 |
E | HOH689 |
site_id | EC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO E 406 |
Chain | Residue |
E | TYR82 |
E | HOH823 |
E | HOH826 |
site_id | EC9 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO E 407 |
Chain | Residue |
E | ARG59 |
E | SER60 |
E | TYR291 |
E | HOH513 |
E | HOH628 |
F | GLY61 |
F | ARG63 |
F | LEU64 |
F | ALA290 |
site_id | FC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO E 408 |
Chain | Residue |
E | LEU64 |
E | SER67 |
E | ALA68 |
E | PRO289 |
E | HOH524 |
E | HOH631 |
E | HOH634 |
E | HOH701 |
site_id | FC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO E 409 |
Chain | Residue |
B | PHE58 |
B | ARG59 |
D | LEU64 |
E | GLU295 |
E | HOH609 |
E | HOH640 |
site_id | FC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO E 410 |
Chain | Residue |
C | GLU78 |
E | THR57 |
E | HIS175 |
E | THR256 |
E | HOH819 |
site_id | FC4 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO E 411 |
Chain | Residue |
B | HIS217 |
E | ALA221 |
E | GLN266 |
E | ALA269 |
E | HOH559 |
E | HOH663 |
E | HOH669 |
E | HOH739 |
site_id | FC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN F 401 |
Chain | Residue |
F | ASP159 |
F | HIS161 |
F | ASP242 |
F | ASP244 |
F | MN402 |
F | HOH738 |
site_id | FC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN F 402 |
Chain | Residue |
F | HIS135 |
F | ASP159 |
F | ASP163 |
F | ASP242 |
F | MN401 |
F | HOH738 |
site_id | FC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO F 403 |
Chain | Residue |
D | ASN80 |
F | TRP165 |
F | TRP201 |
F | ASN202 |
F | ASP203 |
F | HOH705 |
site_id | FC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO F 404 |
Chain | Residue |
F | TRP215 |
F | HIS219 |
F | ARG227 |
site_id | FC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO F 405 |
Chain | Residue |
F | PRO83 |
F | TRP84 |
F | ARG272 |
site_id | GC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO F 406 |
Chain | Residue |
F | ARG127 |
F | TRP312 |
F | LYS316 |
F | HOH698 |
site_id | GC2 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO F 407 |
Chain | Residue |
F | LEU64 |
F | SER67 |
F | ALA68 |
F | PRO289 |
F | HOH607 |
F | HOH611 |
F | HOH641 |
F | HOH642 |
site_id | GC3 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO F 408 |
Chain | Residue |
E | GLY61 |
E | ARG63 |
E | LEU64 |
E | ALA290 |
E | HOH628 |
F | ARG59 |
F | SER60 |
F | TYR291 |
F | HOH510 |
site_id | GC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO F 409 |
Chain | Residue |
A | HIS217 |
A | HOH617 |
F | ALA221 |
F | GLN266 |
F | ALA269 |
F | HOH569 |
F | HOH636 |
site_id | GC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO F 410 |
Chain | Residue |
A | PHE58 |
A | ARG59 |
C | LEU64 |
F | GLU295 |
F | HOH572 |
F | HOH763 |
Functional Information from PROSITE/UniProt
site_id | PS01053 |
Number of Residues | 22 |
Details | ARGINASE_1 Arginase family signature. TFDIDcldPafaPGtgtpvagG |
Chain | Residue | Details |
A | THR240-GLY261 |