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4DYJ

Crystal structure of a broad specificity amino acid racemase (Bar) within internal aldimine linkage

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0006522biological_processalanine metabolic process
A0008784molecular_functionalanine racemase activity
A0016853molecular_functionisomerase activity
B0003824molecular_functioncatalytic activity
B0006522biological_processalanine metabolic process
B0008784molecular_functionalanine racemase activity
B0016853molecular_functionisomerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 501
ChainResidue
AALA390
ALEU391
BARG326
BLYS346

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 502
ChainResidue
AARG326
ALYS346
BALA390
BLEU391

site_idAC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 503
ChainResidue
AASP409

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 504
ChainResidue
AARG340
AGLY377
AGLU378

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 505
ChainResidue
ALYS230
AHIS231
ALYS233

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 506
ChainResidue
AGLN374
AALA375

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 507
ChainResidue
AMET179
AALA180
ATHR181
ATRP182
AARG185

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 508
ChainResidue
ATYR301
ASER348
AMET349
AASN350
ATHR351
AHOH616
BLLP75
BARG174
BHOH753

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 501
ChainResidue
BVAL408
BASP409

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 502
ChainResidue
BARG340
BGLY377
BGLU378

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 503
ChainResidue
BHIS333
BPRO342

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 504
ChainResidue
BGLN374
BALA375

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 505
ChainResidue
BTHR181
BTRP182
BSER183
BGLN190

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 506
ChainResidue
BHIS339
BARG340
BPHE359

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 507
ChainResidue
BLYS211
BARG215

site_idBC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 508
ChainResidue
ALLP75
AARG174
BTYR301
BSER348
BMET349
BASN350
BHOH635

Functional Information from PROSITE/UniProt
site_idPS00395
Number of Residues11
DetailsALANINE_RACEMASE Alanine racemase pyridoxal-phosphate attachment site. AVlKADAYGHG
ChainResidueDetails
AALA72-GLY82

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_02212, ECO:0000305|PubMed:23118975
ChainResidueDetails
ALLP75
ATYR301
BLLP75
BTYR301

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02212
ChainResidueDetails
AARG174
AMET349
BARG174
BMET349

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000255|HAMAP-Rule:MF_02212, ECO:0000269|PubMed:23118975
ChainResidueDetails
ALLP75
BLLP75

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PDB entries from 2024-07-24

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