4DWW

Crystal Structure of Nattokinase from Bacillus subtilis natto

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004252	molecular_function	serine-type endopeptidase activity
A	0006508	biological_process	proteolysis
A	0008236	molecular_function	serine-type peptidase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA A 301

Chain	Residue
A	ALA169
A	TYR171
A	THR174
A	ASP197
A	HOH416

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site_id	AC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA A 302

Chain	Residue
A	ILE79
A	VAL81
A	GLN2
A	ASP41
A	LEU75
A	ASN77

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Functional Information from PROSITE/UniProt

site_id	PS00136
Number of Residues	12
Details	SUBTILASE_ASP Serine proteases, subtilase family, aspartic acid active site. VAVIDSGIdssH

Chain	Residue	Details
A	VAL28-HIS39

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site_id	PS00137
Number of Residues	11
Details	SUBTILASE_HIS Serine proteases, subtilase family, histidine active site. HGThVAGtIAA

Chain	Residue	Details
A	HIS64-ALA74

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site_id	PS00138
Number of Residues	11
Details	SUBTILASE_SER Serine proteases, subtilase family, serine active site. GTSmAtPhVAG

Chain	Residue	Details
A	GLY219-GLY229

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	ACT_SITE: Charge relay system => ECO:0000255|PROSITE-ProRule:PRU01240

Chain	Residue	Details
A	ASP32
A	HIS64

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site_id	SWS_FT_FI2
Number of Residues	1
Details	ACT_SITE: Charge relay system => ECO:0000255|PROSITE-ProRule:PRU01240, ECO:0000305|PubMed:24121331

Chain	Residue	Details
A	SEB221

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site_id	SWS_FT_FI3
Number of Residues	8
Details	BINDING: BINDING => ECO:0007744|PDB:3VYV, ECO:0007744|PDB:4DWW, ECO:0007744|PDB:5GL8

Chain	Residue	Details
A	ASP41
A	LEU75
A	ASN77
A	ILE79
A	VAL81
A	ALA169
A	THR174
A	ASP197

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site_id	SWS_FT_FI4
Number of Residues	1
Details	BINDING: BINDING => ECO:0007744|PDB:4DWW, ECO:0007744|PDB:5GL8

Chain	Residue	Details
A	TYR171

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