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4DWI

Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with self complementary DNA, Se-dGTP and Calcium

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0004518molecular_functionnuclease activity
A0006139biological_processnucleobase-containing compound metabolic process
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0008408molecular_function3'-5' exonuclease activity
A0046872molecular_functionmetal ion binding
A0071897biological_processDNA biosynthetic process
A0097681biological_processdouble-strand break repair via alternative nonhomologous end joining
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 901
ChainResidue
AGLU321
AHOH1130
APHE371
AARG375
AASP409
AVAL410
AASP425
ALYS450
AHOH1006
AHOH1123

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 902
ChainResidue
ATHR586
APRO621
AASN622
AASN625
BDT7

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 903
ChainResidue
APHE490
AALA491
ALYS601

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 904
ChainResidue
ATYR327
AASP372
ALYS374
APHE606
AASN607
AGLN608
AHOH1027
AHOH1033
AHOH1151

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 905
ChainResidue
AMET299
AALA300
AARG343
AARG677

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 906
ChainResidue
AHIS682
AARG702
ALYS706

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 907
ChainResidue
ASER655
AGLN656
AHOH1087

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 908
ChainResidue
AARG306
ATHR308
AGLU309
AHOH1135

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 909
ChainResidue
AARG779
AARG819

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 910
ChainResidue
ASER530
ALYS532
AGLN533
BDA10

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE 9MG B 101
ChainResidue
BDA10
CDT3
CCA101

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CA C 101
ChainResidue
B9MG101
CHOH201

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RrqAKavnFGivYgiSdygL
ChainResidueDetails
AARG702-LEU721

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PDB entries from 2024-05-01

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