4DST
Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000139 | cellular_component | Golgi membrane |
A | 0000165 | biological_process | MAPK cascade |
A | 0001934 | biological_process | positive regulation of protein phosphorylation |
A | 0003924 | molecular_function | GTPase activity |
A | 0003925 | molecular_function | G protein activity |
A | 0005515 | molecular_function | protein binding |
A | 0005525 | molecular_function | GTP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0005741 | cellular_component | mitochondrial outer membrane |
A | 0005789 | cellular_component | endoplasmic reticulum membrane |
A | 0005829 | cellular_component | cytosol |
A | 0005886 | cellular_component | plasma membrane |
A | 0005925 | cellular_component | focal adhesion |
A | 0007165 | biological_process | signal transduction |
A | 0007265 | biological_process | Ras protein signal transduction |
A | 0008283 | biological_process | cell population proliferation |
A | 0008542 | biological_process | visual learning |
A | 0009898 | cellular_component | cytoplasmic side of plasma membrane |
A | 0010467 | biological_process | gene expression |
A | 0010628 | biological_process | positive regulation of gene expression |
A | 0012505 | cellular_component | endomembrane system |
A | 0014009 | biological_process | glial cell proliferation |
A | 0016020 | cellular_component | membrane |
A | 0016601 | biological_process | Rac protein signal transduction |
A | 0016787 | molecular_function | hydrolase activity |
A | 0019003 | molecular_function | GDP binding |
A | 0021897 | biological_process | forebrain astrocyte development |
A | 0030036 | biological_process | actin cytoskeleton organization |
A | 0030857 | biological_process | negative regulation of epithelial cell differentiation |
A | 0032228 | biological_process | regulation of synaptic transmission, GABAergic |
A | 0035022 | biological_process | positive regulation of Rac protein signal transduction |
A | 0035914 | biological_process | skeletal muscle cell differentiation |
A | 0043495 | molecular_function | protein-membrane adaptor activity |
A | 0043524 | biological_process | negative regulation of neuron apoptotic process |
A | 0044877 | molecular_function | protein-containing complex binding |
A | 0048169 | biological_process | regulation of long-term neuronal synaptic plasticity |
A | 0048873 | biological_process | homeostasis of number of cells within a tissue |
A | 0051146 | biological_process | striated muscle cell differentiation |
A | 0051402 | biological_process | neuron apoptotic process |
A | 0060252 | biological_process | positive regulation of glial cell proliferation |
A | 0060441 | biological_process | epithelial tube branching involved in lung morphogenesis |
A | 0060509 | biological_process | type I pneumocyte differentiation |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE 9LI A 201 |
Chain | Residue |
A | LYS5 |
A | ARG123 |
A | HOH376 |
A | VAL7 |
A | SER39 |
A | LEU56 |
A | THR74 |
A | GLY75 |
A | CYS118 |
A | ASP119 |
A | LEU120 |
site_id | AC2 |
Number of Residues | 27 |
Details | BINDING SITE FOR RESIDUE GCP A 202 |
Chain | Residue |
A | ASP12 |
A | GLY13 |
A | VAL14 |
A | GLY15 |
A | LYS16 |
A | SER17 |
A | ALA18 |
A | PHE28 |
A | VAL29 |
A | ASP30 |
A | GLU31 |
A | TYR32 |
A | PRO34 |
A | THR35 |
A | GLY60 |
A | ASN116 |
A | LYS117 |
A | ASP119 |
A | LEU120 |
A | SER145 |
A | ALA146 |
A | MG203 |
A | HOH301 |
A | HOH302 |
A | HOH303 |
A | HOH310 |
A | HOH342 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG A 203 |
Chain | Residue |
A | SER17 |
A | THR35 |
A | GCP202 |
A | HOH301 |
A | HOH302 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL A 204 |
Chain | Residue |
A | ASP92 |
A | TYR96 |
A | GLN99 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A 205 |
Chain | Residue |
A | LYS101 |
A | ARG102 |
A | ASP105 |
A | SER106 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE DMS A 206 |
Chain | Residue |
A | ASP33 |
A | ILE36 |
A | GLU37 |
A | ASP38 |
A | HOH339 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ACT A 207 |
Chain | Residue |
A | ARG97 |
A | VAL109 |
A | GLY138 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 208 |
Chain | Residue |
A | GLY10 |
A | ALA59 |
A | GLY60 |
A | TYR96 |
A | HOH305 |
A | HOH308 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000269|PubMed:22431598, ECO:0000269|PubMed:22566140 |
Chain | Residue | Details |
A | GLY10 | |
A | VAL29 | |
A | ALA59 | |
A | ASN116 |
site_id | SWS_FT_FI2 |
Number of Residues | 1 |
Details | MOD_RES: N-acetylthreonine; in GTPase KRas, N-terminally processed => ECO:0000269|Ref.17 |
Chain | Residue | Details |
A | THR2 |
site_id | SWS_FT_FI3 |
Number of Residues | 1 |
Details | MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:22711838 |
Chain | Residue | Details |
A | LYS104 |
site_id | SWS_FT_FI4 |
Number of Residues | 1 |
Details | MOD_RES: Cysteine methyl ester => ECO:0000269|PubMed:27791178, ECO:0007744|PDB:5TAR, ECO:0007744|PDB:5TB5 |
Chain | Residue | Details |
A | VAL186 |
site_id | SWS_FT_FI5 |
Number of Residues | 1 |
Details | LIPID: S-palmitoyl cysteine => ECO:0000305|PubMed:29239724 |
Chain | Residue | Details |
A | LYS180 |
site_id | SWS_FT_FI6 |
Number of Residues | 1 |
Details | LIPID: N6-palmitoyl lysine => ECO:0000269|PubMed:29239724 |
Chain | Residue | Details |
A | LYS182 |
site_id | SWS_FT_FI7 |
Number of Residues | 2 |
Details | LIPID: N6-palmitoyl lysine => ECO:0000305|PubMed:29239724 |
Chain | Residue | Details |
A | LYS184 | |
A | CYS185 |
site_id | SWS_FT_FI8 |
Number of Residues | 1 |
Details | LIPID: S-farnesyl cysteine => ECO:0000269|PubMed:27791178, ECO:0000305|PubMed:24415755, ECO:0007744|PDB:5TAR, ECO:0007744|PDB:5TB5 |
Chain | Residue | Details |
A | VAL186 |
site_id | SWS_FT_FI9 |
Number of Residues | 1 |
Details | CARBOHYD: (Microbial infection) O-linked (Glc) threonine; by P.sordellii toxin TcsL => ECO:0000269|PubMed:19744486 |
Chain | Residue | Details |
A | THR35 |
site_id | SWS_FT_FI10 |
Number of Residues | 2 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:30442762 |
Chain | Residue | Details |
A | MET170 |