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4DSJ

Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, dGTP and Calcium

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0004518molecular_functionnuclease activity
A0006139biological_processnucleobase-containing compound metabolic process
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006302biological_processdouble-strand break repair
A0006974biological_processDNA damage response
A0008408molecular_function3'-5' exonuclease activity
A0046872molecular_functionmetal ion binding
A0071897biological_processDNA biosynthetic process
B0000166molecular_functionnucleotide binding
B0003676molecular_functionnucleic acid binding
B0003677molecular_functionDNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0004518molecular_functionnuclease activity
B0006139biological_processnucleobase-containing compound metabolic process
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006302biological_processdouble-strand break repair
B0006974biological_processDNA damage response
B0008408molecular_function3'-5' exonuclease activity
B0046872molecular_functionmetal ion binding
B0071897biological_processDNA biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE DGT A 1001
ChainResidue
AARG629
AGLN656
AARG702
ALYS706
APHE710
AASP830
ACA1002
ACA1003
CDG12

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A 1002
ChainResidue
AASP830
AGLU831
ADGT1001
CDG12

site_idAC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CA A 1003
ChainResidue
ADGT1001

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RrqAKavnFGivYgiSdygL
ChainResidueDetails
AARG702-LEU721

224572

PDB entries from 2024-09-04

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