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4DPP

The structure of dihydrodipicolinate synthase 2 from Arabidopsis thaliana

Functional Information from GO Data
ChainGOidnamespacecontents
A0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
A0009085biological_processlysine biosynthetic process
A0009089biological_processlysine biosynthetic process via diaminopimelate
A0009507cellular_componentchloroplast
A0016829molecular_functionlyase activity
A0019877biological_processdiaminopimelate biosynthetic process
B0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
B0009085biological_processlysine biosynthetic process
B0009089biological_processlysine biosynthetic process via diaminopimelate
B0009507cellular_componentchloroplast
B0016829molecular_functionlyase activity
B0019877biological_processdiaminopimelate biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE NA A 401
ChainResidue
APHE345
AVAL346
AGLY347
ANA402
AHOH541
AHOH550
AHOH553
AHOH598

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NA A 402
ChainResidue
ANA401
AHOH550
AHOH553
AHOH598
AHOH658
AHOH690
AGLU343

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NA B 401
ChainResidue
BGLU343
BNA402
BHOH538
BHOH564
BHOH640
BHOH680
BHOH705

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE NA B 402
ChainResidue
BPHE345
BVAL346
BGLY347
BNA401
BHOH538
BHOH543
BHOH564
BHOH640

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 403
ChainResidue
BARG252
BHOH518
BHOH542
BHOH563
BHOH597

Functional Information from PROSITE/UniProt
site_idPS00665
Number of Residues18
DetailsDHDPS_1 Dihydrodipicolinate synthase signature 1. GVIvgGTTGEGqlmswdE
ChainResidueDetails
AGLY101-GLU118

site_idPS00666
Number of Residues31
DetailsDHDPS_2 Dihydrodipicolinate synthase signature 2. YNVPgrTgqdIppraifklsqnpn.LaGVKEC
ChainResidueDetails
ATYR194-CYS224

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor => ECO:0000250
ChainResidueDetails
ATYR194
BTYR194

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Schiff-base intermediate with substrate => ECO:0000250
ChainResidueDetails
ALYS222
BLYS222

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ATHR108
AILE261
BTHR108
BILE261

site_idSWS_FT_FI4
Number of Residues4
DetailsSITE: Part of a proton relay during catalysis => ECO:0000250
ChainResidueDetails
ATHR107
ATYR170
BTHR107
BTYR170

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PDB entries from 2024-07-24

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