4DPM
Structure of malonyl-coenzyme A reductase from crenarchaeota in complex with CoA
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003723 | molecular_function | RNA binding |
A | 0008652 | biological_process | amino acid biosynthetic process |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
A | 0046983 | molecular_function | protein dimerization activity |
A | 0050661 | molecular_function | NADP binding |
A | 0051287 | molecular_function | NAD binding |
B | 0003723 | molecular_function | RNA binding |
B | 0008652 | biological_process | amino acid biosynthetic process |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
B | 0046983 | molecular_function | protein dimerization activity |
B | 0050661 | molecular_function | NADP binding |
B | 0051287 | molecular_function | NAD binding |
C | 0003723 | molecular_function | RNA binding |
C | 0008652 | biological_process | amino acid biosynthetic process |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
C | 0046983 | molecular_function | protein dimerization activity |
C | 0050661 | molecular_function | NADP binding |
C | 0051287 | molecular_function | NAD binding |
D | 0003723 | molecular_function | RNA binding |
D | 0008652 | biological_process | amino acid biosynthetic process |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
D | 0046983 | molecular_function | protein dimerization activity |
D | 0050661 | molecular_function | NADP binding |
D | 0051287 | molecular_function | NAD binding |
E | 0003723 | molecular_function | RNA binding |
E | 0008652 | biological_process | amino acid biosynthetic process |
E | 0016491 | molecular_function | oxidoreductase activity |
E | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
E | 0046983 | molecular_function | protein dimerization activity |
E | 0050661 | molecular_function | NADP binding |
E | 0051287 | molecular_function | NAD binding |
F | 0003723 | molecular_function | RNA binding |
F | 0008652 | biological_process | amino acid biosynthetic process |
F | 0016491 | molecular_function | oxidoreductase activity |
F | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
F | 0046983 | molecular_function | protein dimerization activity |
F | 0050661 | molecular_function | NADP binding |
F | 0051287 | molecular_function | NAD binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE MG A 401 |
Chain | Residue |
A | TYR187 |
A | COA402 |
site_id | AC2 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE COA A 402 |
Chain | Residue |
A | GLY42 |
A | SER43 |
A | THR72 |
A | PRO86 |
A | LEU87 |
A | ALA91 |
A | ASN109 |
A | CYS153 |
A | GLY184 |
A | GLY186 |
A | TYR187 |
A | ASN335 |
A | MG401 |
A | HOH630 |
A | HOH669 |
A | HOH692 |
A | HOH693 |
A | HOH700 |
A | HOH713 |
A | HOH716 |
A | GLY14 |
A | HOH717 |
A | HOH766 |
A | THR16 |
A | GLY17 |
A | LEU18 |
A | VAL19 |
A | GLY40 |
A | LYS41 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG B 401 |
Chain | Residue |
B | TYR187 |
B | COA402 |
B | HOH662 |
B | HOH693 |
site_id | AC4 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE COA B 402 |
Chain | Residue |
B | GLY14 |
B | THR16 |
B | GLY17 |
B | LEU18 |
B | VAL19 |
B | GLY40 |
B | LYS41 |
B | GLY42 |
B | SER43 |
B | ILE69 |
B | THR72 |
B | PRO86 |
B | LEU87 |
B | ALA91 |
B | ASN109 |
B | CYS153 |
B | GLY184 |
B | GLY186 |
B | TYR187 |
B | ASN335 |
B | MG401 |
B | HOH662 |
B | HOH666 |
B | HOH673 |
B | HOH677 |
B | HOH693 |
B | HOH698 |
B | HOH722 |
B | HOH743 |
B | HOH769 |
site_id | AC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE MG C 401 |
Chain | Residue |
C | TYR187 |
C | COA402 |
site_id | AC6 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE COA C 402 |
Chain | Residue |
C | GLY14 |
C | THR16 |
C | GLY17 |
C | LEU18 |
C | VAL19 |
C | GLY40 |
C | LYS41 |
C | GLY42 |
C | SER43 |
C | THR72 |
C | PRO86 |
C | LEU87 |
C | ALA91 |
C | ASN109 |
C | CYS153 |
C | GLY184 |
C | GLY186 |
C | TYR187 |
C | ASN335 |
C | MG401 |
C | HOH607 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG D 401 |
Chain | Residue |
D | TYR187 |
D | COA402 |
D | HOH623 |
site_id | AC8 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE COA D 402 |
Chain | Residue |
D | SER43 |
D | THR72 |
D | PRO86 |
D | LEU87 |
D | ALA91 |
D | ASN109 |
D | CYS153 |
D | GLY184 |
D | GLY186 |
D | TYR187 |
D | ASN335 |
D | MG401 |
D | HOH614 |
D | HOH623 |
D | HOH635 |
D | GLY14 |
D | THR16 |
D | GLY17 |
D | LEU18 |
D | VAL19 |
D | GLY40 |
D | LYS41 |
D | GLY42 |
site_id | AC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG E 401 |
Chain | Residue |
E | TYR187 |
E | COA402 |
E | HOH611 |
E | HOH650 |
site_id | BC1 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE COA E 402 |
Chain | Residue |
E | GLY14 |
E | THR16 |
E | GLY17 |
E | LEU18 |
E | VAL19 |
E | GLY40 |
E | LYS41 |
E | GLY42 |
E | SER43 |
E | THR72 |
E | PRO86 |
E | LEU87 |
E | ALA91 |
E | ASN109 |
E | CYS153 |
E | GLY184 |
E | GLY186 |
E | TYR187 |
E | ASN335 |
E | MG401 |
E | HOH633 |
E | HOH650 |
site_id | BC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE MG F 401 |
Chain | Residue |
F | TYR187 |
F | COA402 |
site_id | BC3 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE COA F 402 |
Chain | Residue |
F | GLY14 |
F | THR16 |
F | GLY17 |
F | LEU18 |
F | VAL19 |
F | GLY40 |
F | LYS41 |
F | GLY42 |
F | SER43 |
F | THR72 |
F | PRO86 |
F | LEU87 |
F | ALA91 |
F | ASN109 |
F | CYS153 |
F | GLY184 |
F | GLY186 |
F | TYR187 |
F | ASN335 |
F | MG401 |
F | HOH623 |
F | HOH624 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | ACT_SITE: Acyl-thioester intermediate => ECO:0000250 |
Chain | Residue | Details |
A | CYS153 | |
B | CYS153 | |
C | CYS153 | |
D | CYS153 | |
E | CYS153 | |
F | CYS153 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | ACT_SITE: Proton acceptor => ECO:0000250 |
Chain | Residue | Details |
A | HIS248 | |
B | HIS248 | |
C | HIS248 | |
D | HIS248 | |
E | HIS248 | |
F | HIS248 |
site_id | SWS_FT_FI3 |
Number of Residues | 18 |
Details | BINDING: BINDING => ECO:0000250 |
Chain | Residue | Details |
A | THR16 | |
D | THR16 | |
D | SER183 | |
D | ASN335 | |
E | THR16 | |
E | SER183 | |
E | ASN335 | |
F | THR16 | |
F | SER183 | |
F | ASN335 | |
A | SER183 | |
A | ASN335 | |
B | THR16 | |
B | SER183 | |
B | ASN335 | |
C | THR16 | |
C | SER183 | |
C | ASN335 |