Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4DJF

Crystal structure of folate-bound corrinoid iron-sulfur protein (CFeSP) in complex with its methyltransferase (MeTr), co-crystallized with folate and Ti(III) citrate reductant

Functional Information from GO Data
ChainGOidnamespacecontents
A0005509molecular_functioncalcium ion binding
A0005515molecular_functionprotein binding
A0005829cellular_componentcytosol
A0008168molecular_functionmethyltransferase activity
A0008705molecular_functionmethionine synthase activity
A0009086biological_processmethionine biosynthetic process
A0015977biological_processcarbon fixation
A0031419molecular_functioncobalamin binding
A0032259biological_processmethylation
A0042558biological_processpteridine-containing compound metabolic process
A0044237biological_processcellular metabolic process
A0046872molecular_functionmetal ion binding
A0102036molecular_functionmethyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase activity
B0005509molecular_functioncalcium ion binding
B0005515molecular_functionprotein binding
B0005829cellular_componentcytosol
B0008168molecular_functionmethyltransferase activity
B0008705molecular_functionmethionine synthase activity
B0009086biological_processmethionine biosynthetic process
B0015977biological_processcarbon fixation
B0031419molecular_functioncobalamin binding
B0032259biological_processmethylation
B0042558biological_processpteridine-containing compound metabolic process
B0044237biological_processcellular metabolic process
B0046872molecular_functionmetal ion binding
B0102036molecular_functionmethyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase activity
C0005506molecular_functioniron ion binding
C0005515molecular_functionprotein binding
C0008168molecular_functionmethyltransferase activity
C0015977biological_processcarbon fixation
C0031419molecular_functioncobalamin binding
C0044237biological_processcellular metabolic process
C0046356biological_processacetyl-CoA catabolic process
C0046872molecular_functionmetal ion binding
C0051536molecular_functioniron-sulfur cluster binding
C0051539molecular_function4 iron, 4 sulfur cluster binding
D0005515molecular_functionprotein binding
D0006730biological_processone-carbon metabolic process
D0015977biological_processcarbon fixation
D0031419molecular_functioncobalamin binding
D0044237biological_processcellular metabolic process
E0005506molecular_functioniron ion binding
E0005515molecular_functionprotein binding
E0008168molecular_functionmethyltransferase activity
E0015977biological_processcarbon fixation
E0031419molecular_functioncobalamin binding
E0044237biological_processcellular metabolic process
E0046356biological_processacetyl-CoA catabolic process
E0046872molecular_functionmetal ion binding
E0051536molecular_functioniron-sulfur cluster binding
E0051539molecular_function4 iron, 4 sulfur cluster binding
F0005515molecular_functionprotein binding
F0006730biological_processone-carbon metabolic process
F0015977biological_processcarbon fixation
F0031419molecular_functioncobalamin binding
F0044237biological_processcellular metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE C2F A 300
ChainResidue
AGLU6
AGLN202
AARG207
AMET11
APHE12
AASP75
AASN96
AILE120
AASP160
ASER198
AASN199

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CA A 301
ChainResidue
AGLY222
AASP224

site_idAC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE C2F B 300
ChainResidue
BGLU6
BMET11
BPHE12
BASP75
BASN96
BLEU122
BASP160
BGLY196
BSER198
BASN199
BGLN202
BARG207

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CA B 301
ChainResidue
BASP224
BHOH402

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SF4 C 501
ChainResidue
CASN16
CCYS17
CGLY18
CGLU19
CCYS20
CCYS25
CPHE28
CCYS42
CTYR44

site_idAC6
Number of Residues21
DetailsBINDING SITE FOR RESIDUE COB C 502
ChainResidue
BVAL168
BASN199
BGLN202
BASN203
CPRO318
CTYR338
CVAL339
CTHR340
CTHR346
CGLY370
CLEU371
CSER372
CVAL373
CTHR375
CALA378
CASP379
CILE406
CPRO408
CPRO430
CARG431
CALA433

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SF4 E 501
ChainResidue
EPRO13
ELYS15
EASN16
ECYS17
EGLY18
ECYS20
ECYS25
ECYS42

site_idAC8
Number of Residues22
DetailsBINDING SITE FOR RESIDUE COB E 502
ChainResidue
AVAL168
AGLN202
AASN203
ETYR338
EVAL339
ETHR340
EPHE343
ETHR346
EVAL350
EGLY370
ELEU371
ESER372
EVAL373
ELEU374
ETHR375
EALA378
EASP379
EILE406
EPRO408
EPRO430
EARG431
EALA433

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:22419154, ECO:0007744|PDB:4DJD
ChainResidueDetails
DPRO188
FPRO188
CCYS25
CCYS42
ECYS17
ECYS20
ECYS25
ECYS42

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000305|PubMed:22419154, ECO:0007744|PDB:4DJD
ChainResidueDetails
CTHR340
CTHR346
CGLY370
CALA433
ETHR340
ETHR346
EGLY370
EALA433

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17172470, ECO:0000269|PubMed:22419154, ECO:0007744|PDB:4DJF
ChainResidueDetails
AGLN202
BGLN202

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Transition state stabilizer
ChainResidueDetails
AASN199
BASN199

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon