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4DJA

Crystal structure of a prokaryotic (6-4) photolyase PhrB from Agrobacterium Tumefaciens with an Fe-S cluster and a 6,7-dimethyl-8-ribityllumazine antenna chromophore at 1.45A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000719biological_processphotoreactive repair
A0003677molecular_functionDNA binding
A0003914molecular_functionDNA (6-4) photolyase activity
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0016829molecular_functionlyase activity
A0046872molecular_functionmetal ion binding
A0051536molecular_functioniron-sulfur cluster binding
A0051539molecular_function4 iron, 4 sulfur cluster binding
A0071949molecular_functionFAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues29
DetailsBINDING SITE FOR RESIDUE FAD A 601
ChainResidue
APHE249
AILE307
AARG311
ATYR363
AALA364
AHIS366
AARG369
ATYR391
AASP397
AALA398
AVAL402
AHIS265
AGLU403
AASN406
AHOH706
AHOH731
AHOH732
AHOH757
AHOH914
AHOH918
AHOH1073
AHOH1446
ASER266
ALEU267
ALEU268
ASER269
AASN273
APHE303
AGLN306

site_idAC2
Number of Residues16
DetailsBINDING SITE FOR RESIDUE DLZ A 602
ChainResidue
ALEU8
AGLY9
AASP10
ACYS32
AGLU33
AVAL34
AGLU37
ATYR40
AHIS43
AILE51
APHE52
APHE83
AGLY105
AGLU106
ATYR399
AHOH735

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SF4 A 603
ChainResidue
AMET348
ACYS350
AILE431
ATYR437
ACYS438
ACYS441
ATYR443
ACYS454

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 604
ChainResidue
AGLU103
APRO104
AASP129
AHOH799
AHOH825
AHOH989

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 605
ChainResidue
APRO14
AGLU65
AHOH1315

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 606
ChainResidue
AGLU332
AASP334

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"23589886","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4DJA","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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