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4DFP

Crystal structure of the large fragment of DNA Polymerase I from Thermus aqauticus in a ternary complex with 7-(aminopentinyl)-7-deaza-dGTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 901
ChainResidue
AASP610
ATYR611
AASP785
AMG902
A0L7908

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 902
ChainResidue
AHOH1001
BDOC112
AASP610
AASP785
AMG901
A0L7908

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 903
ChainResidue
AARG573
AGLU615
AGLN754
AALA757
AHIS784
A0L7908
AHOH1060

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT A 904
ChainResidue
AARG469
AGLN534
AGLU794

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 905
ChainResidue
ALYS354
AASP355
AHOH1012
AHOH1014

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FMT A 906
ChainResidue
AHIS443
AHOH1117

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 907
ChainResidue
AGLU337
APRO338
ATYR339
ALYS340
BDG101

site_idAC8
Number of Residues26
DetailsBINDING SITE FOR RESIDUE 0L7 A 908
ChainResidue
AARG573
AASP610
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659
AARG660
ALYS663
ATHR664
APHE667
ATYR671
AASP785
AMG901
AMG902
AEDO903
AHOH1031
AHOH1047
AHOH1057
AHOH1072
BDOC112
BHOH304
CDC204
CDG205

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 909
ChainResidue
AARG801
AGLU805
ALEU813
AALA814
AHOH1119

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 910
ChainResidue
AHOH1204
AHOH1205
AHOH1206
AHOH1207
BHOH327
CHOH432

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 911
ChainResidue
AALA517
AGLU520
AGLN680
CDA201
CDA202

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT A 912
ChainResidue
AALA608
AGLU820
ALYS831

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 913
ChainResidue
AGLU825
AHOH1210
AHOH1211
AHOH1212
AHOH1213
AHOH1214
AHOH1215

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT B 201
ChainResidue
BDG110
BHOH307
BHOH312
BHOH321

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 202
ChainResidue
BHOH322
BHOH323
BHOH324
BHOH325
BHOH326
CHOH431

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT C 301
ChainResidue
CDC204
CDG205
CDG206
CEDO302
CHOH411

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO C 302
ChainResidue
CDG205
CDG206
CFMT301

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT C 303
ChainResidue
AASP578
APRO579
CDC209
CHOH433

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

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PDB entries from 2024-06-12

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