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4DFJ

Crystal structure of the large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with 5-(aminopentinyl)-dTTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 901
ChainResidue
AASP610
AASP785
AMG902
A0KL903
AHOH1011
AHOH1026

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 902
ChainResidue
AMG901
A0KL903
AASP610
ATYR611
AASP785

site_idAC3
Number of Residues25
DetailsBINDING SITE FOR RESIDUE 0KL A 903
ChainResidue
AARG573
AASP610
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659
AARG660
ALYS663
ATHR664
APHE667
AASP785
AMG901
AMG902
AFMT904
AHOH1013
AHOH1020
AHOH1026
AHOH1050
BDOC112
BCL203
CDA204
CDG205

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A 904
ChainResidue
AARG573
AGLU615
AALA757
A0KL903

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 905
ChainResidue
ASER383
ATHR385
ATHR386
AHOH1038

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 906
ChainResidue
AARG771
AHOH1089
AHOH1150

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 907
ChainResidue
ATHR544
ATYR545
APRO579
AASN580
AASN583
CDC209

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT A 908
ChainResidue
AARG425
ATRP428
APHE724

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 909
ChainResidue
AHIS621
AARG771
AGLU774
AMET775
AMG912

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT A 910
ChainResidue
ALYS508
AGLU734
AALA735

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 911
ChainResidue
AASP488
AHOH1090
CDT212
CDG213
CMG302

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 912
ChainResidue
AHIS621
ALEU723
AEDO909

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 913
ChainResidue
AGLU347
AARG349
AGLY370
AASP371
AARG435

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A 914
ChainResidue
AARG313
AGLU315
AASP578
AHOH1084

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT B 201
ChainResidue
ALYS508
BDC106
BDG107
BHOH303
BHOH323

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 202
ChainResidue
BHOH302
BHOH303
BHOH304
BHOH305
CHOH401

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 203
ChainResidue
A0KL903
BDC111
BDOC112
BHOH301

site_idBC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO C 301
ChainResidue
CDG213
CDG214

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 302
ChainResidue
AHOH1143
AHOH1144
CDG211
CDT212
AEDO911
AHOH1090

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C 303
ChainResidue
BHOH306
CDG205
CHOH402
CHOH403
CHOH404

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

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PDB entries from 2024-07-10

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