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4DF9

Crystal structure of a putative peptidase (BF3526) from Bacteroides fragilis NCTC 9343 at 2.17 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0008237molecular_functionmetallopeptidase activity
B0008237molecular_functionmetallopeptidase activity
C0008237molecular_functionmetallopeptidase activity
D0008237molecular_functionmetallopeptidase activity
E0008237molecular_functionmetallopeptidase activity
F0008237molecular_functionmetallopeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 501
ChainResidue
AALA58
AGLU172
ACYS175
AASP177
AGLU275

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 502
ChainResidue
AHIS311
AHIS315
AASP322
AHOH683

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 503
ChainResidue
AGLU323
ACYS398
ACYS409
ACYS412

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 2PE A 504
ChainResidue
ATYR286
AGLY288
AHIS311
AGLU312
ATYR324
ATYR326
ATYR386
AASN403
AHOH826

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 A 505
ChainResidue
AHIS241
AARG261
AHOH723
AHOH802
BHIS153
BLYS155

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PO4 A 506
ChainResidue
AHIS153
ALYS155
AASP267
AHOH676
AHOH712
AHOH858
BHIS241
BARG261
BHOH772
BHOH850

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 507
ChainResidue
AHIS62
AHIS63
AGLU66
AHOH810

site_idAC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 508
ChainResidue
ATHR283

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA B 501
ChainResidue
BALA58
BGLU172
BCYS175
BASP177
BGLU275
BHOH836

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN B 502
ChainResidue
BHIS311
BHIS315
BASP322

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 503
ChainResidue
BGLU323
BCYS398
BCYS409
BCYS412

site_idBC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE 2PE B 504
ChainResidue
BGLU100
BARG255
BTYR256
BTYR286
BGLY288
BHIS311
BGLU312
BTYR324
BPHE325
BASN403

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 505
ChainResidue
BHIS62
BHIS63
BLEU64
BHOH907

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 506
ChainResidue
BTHR114
BASN266
BGLU275
BILE277
BASN293
BALA294
BHOH644

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 507
ChainResidue
BGLU53
BPRO147
BHOH825

site_idBC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B 508
ChainResidue
BASN72
BSER92
BILE291
BTYR292
BGLY319
BLEU320
BTRP342
BGLU343
BHOH609
BHOH933

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 509
ChainResidue
BARG349
BPRO367
BHOH859

site_idBC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 510
ChainResidue
BTHR283
BGLU284
BHOH918

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 511
ChainResidue
BHIS163
EGLU136
EVAL137

site_idCC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 512
ChainResidue
BASN133
BLYS134

site_idCC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 513
ChainResidue
BLYS84
DASP24

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 514
ChainResidue
BPHE352
BALA353
BHOH676
BHOH793
DASN215

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA C 501
ChainResidue
CALA58
CGLU172
CCYS175
CASP177
CGLU275
CHOH670

site_idCC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 502
ChainResidue
CHIS311
CHIS315
CASP322
CHOH950

site_idCC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 503
ChainResidue
CGLU323
CCYS398
CCYS409
CCYS412

site_idCC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 2PE C 504
ChainResidue
CTYR256
CTYR286
CGLY288
CHIS311
CGLU312
CTYR324
CPHE325
CTYR386
CASN403

site_idCC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 C 505
ChainResidue
CHIS241
CARG261
CHOH727
CHOH820
CHOH853
DHIS153
DLYS155

site_idDC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL C 506
ChainResidue
CSER169
CGLY170
CGLN174
DARG135
DGLU340
DGLN344
DASN351
DSER354
DHOH744
DHOH845

site_idDC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL C 507
ChainResidue
CASN72
CSER92
CILE291
CTYR292
CTRP342
CGLU343
CHOH713
CHOH795

site_idDC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL C 508
ChainResidue
CHIS62
CHIS63
CLEU64

site_idDC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL C 509
ChainResidue
CTHR114
CVAL262
CASN266
CGLU275
CALA294
CHOH612

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 510
ChainResidue
CPRO68
CGLN344
CHOH617
CHOH819
CHOH884

site_idDC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 511
ChainResidue
CHIS247
CSER260
CHOH636
DASP49
DGLU50

site_idDC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C 512
ChainResidue
CTHR158
CHIS159
CILE160
DLYS43

site_idDC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL C 513
ChainResidue
CTHR283
CGLU284

site_idDC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA D 501
ChainResidue
DALA58
DGLU172
DCYS175
DASP177
DGLU275
DHOH746

site_idEC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 502
ChainResidue
DHIS311
DHIS315
DASP322
DHOH826

site_idEC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 503
ChainResidue
DGLU323
DCYS398
DCYS409
DCYS412

site_idEC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE 2PE D 504
ChainResidue
DTYR256
DTYR286
DGLY288
DHIS311
DGLU312
DTYR324
DPHE325
DTYR326
DTYR386
DARG401
DASN403
DHOH982

site_idEC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 D 505
ChainResidue
CLYS155
CHOH783
DHIS241
DARG261
DHOH702
DHOH790

site_idEC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL D 506
ChainResidue
DHIS62
DHIS63
DLEU64
DHOH842

site_idEC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL D 507
ChainResidue
BGLU136
BVAL137
DHIS163
DGLY271
DHOH749
DHOH782
DHOH801

site_idEC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL D 508
ChainResidue
CGLU103
CLYS109
DGLU50
DLEU51
DASP149
DLEU151

site_idEC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL D 509
ChainResidue
DTHR114
DVAL262
DASN266
DGLU275
DASN293
DALA294

site_idEC9
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL D 510
ChainResidue
DASN72
DSER92
DILE291
DTYR292
DGLY319
DLEU320
DTRP342
DGLU343
DGOL515
DHOH671
DHOH822

site_idFC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL D 511
ChainResidue
BARG135
BGLU340
BPRO341
BSER354
BLYS355
DSER169
DGLY170
DGLN174
DHOH786

site_idFC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL D 512
ChainResidue
CASN215
DARG349
DILE350
DASN351
DPHE352
DALA353
DGLU357

site_idFC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL D 513
ChainResidue
DARG418
DGLU421

site_idFC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL D 514
ChainResidue
DTHR158
DHIS159
DILE160
DHOH967

site_idFC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL D 515
ChainResidue
DGLU97
DTYR256
DGLY289
DGLY290
DGLU312
DHIS315
DGOL510
DHOH822
DHOH826

site_idFC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL D 516
ChainResidue
DTHR283
DGLU284

site_idFC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL D 517
ChainResidue
DHOH710

site_idFC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL D 518
ChainResidue
DLYS84

site_idFC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL D 519
ChainResidue
DARG349
DHOH925

site_idGC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL D 520
ChainResidue
DSER212
DLYS214
DASN215

site_idGC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA E 501
ChainResidue
EALA58
EGLU172
ECYS175
EASP177
EGLU275

site_idGC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN E 502
ChainResidue
EHIS311
EHIS315
EASP322
EHOH857

site_idGC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN E 503
ChainResidue
EGLU323
ECYS398
ECYS409
ECYS412

site_idGC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE 2PE E 504
ChainResidue
ETYR286
EHIS311
EGLU312
ETYR324
EPHE325
ETYR326
EARG401
EASN403

site_idGC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 E 505
ChainResidue
EHIS241
EARG261
EHOH653
EHOH800
FHIS153
FLYS155
FASP267

site_idGC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL E 506
ChainResidue
ESER92
EILE291
ETYR292
EGLY319
ELEU320
ETRP342
EGLU343
EHOH604

site_idGC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL E 507
ChainResidue
BSER169
BGLY170
BGLN174
EARG135
EGLU340
EGLN344
ESER354

site_idGC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL E 508
ChainResidue
ATHR27
AASN28
ETHR158
EHIS159
EHOH651

site_idHC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL E 509
ChainResidue
ETHR114
EASN266
EGLU275
EILE277
EASN293
EALA294
EHOH605

site_idHC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL E 510
ChainResidue
EHIS62
EHIS63
ELEU64
EGLU66

site_idHC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL E 511
ChainResidue
ETHR283

site_idHC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA F 501
ChainResidue
FALA58
FGLU172
FCYS175
FASP177
FGLU275

site_idHC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN F 502
ChainResidue
FHIS311
FHIS315
FASP322
FHOH885

site_idHC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN F 503
ChainResidue
FGLU323
FCYS398
FCYS409
FCYS412

site_idHC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE 2PE F 504
ChainResidue
FARG255
FTYR286
FGLY288
FGLU312
FTYR324
FPHE325
FTYR326
FASN403

site_idHC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL F 505
ChainResidue
FSER92
FILE291
FTYR292
FLEU320
FTYR335
FTRP342
FGLU343
FHOH659

site_idHC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL F 506
ChainResidue
FGLN20
FHIS62
FHIS63
FLEU64

site_idIC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL F 507
ChainResidue
FTHR158
FHIS159
FHOH679
FHOH859

site_idIC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL F 508
ChainResidue
FTHR283
FGLU284

Functional Information from PROSITE/UniProt
site_idPS00142
Number of Residues10
DetailsZINC_PROTEASE Neutral zinc metallopeptidases, zinc-binding region signature. VVVHEFGHSF
ChainResidueDetails
AVAL308-PHE317

219140

PDB entries from 2024-05-01

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