Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

4DDF

Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group P4

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0031469	cellular_component	bacterial microcompartment
A	0031472	cellular_component	propanediol degradation polyhedral organelle
A	0046872	molecular_function	metal ion binding
A	0051144	biological_process	1,2-propanediol catabolic process
A	0051536	molecular_function	iron-sulfur cluster binding
A	0051539	molecular_function	4 iron, 4 sulfur cluster binding
B	0031469	cellular_component	bacterial microcompartment
B	0031472	cellular_component	propanediol degradation polyhedral organelle
B	0046872	molecular_function	metal ion binding
B	0051144	biological_process	1,2-propanediol catabolic process
B	0051536	molecular_function	iron-sulfur cluster binding
B	0051539	molecular_function	4 iron, 4 sulfur cluster binding
C	0031469	cellular_component	bacterial microcompartment
C	0031472	cellular_component	propanediol degradation polyhedral organelle
C	0046872	molecular_function	metal ion binding
C	0051144	biological_process	1,2-propanediol catabolic process
C	0051536	molecular_function	iron-sulfur cluster binding
C	0051539	molecular_function	4 iron, 4 sulfur cluster binding
D	0031469	cellular_component	bacterial microcompartment
D	0031472	cellular_component	propanediol degradation polyhedral organelle
D	0046872	molecular_function	metal ion binding
D	0051144	biological_process	1,2-propanediol catabolic process
D	0051536	molecular_function	iron-sulfur cluster binding
D	0051539	molecular_function	4 iron, 4 sulfur cluster binding
E	0031469	cellular_component	bacterial microcompartment
E	0031472	cellular_component	propanediol degradation polyhedral organelle
E	0046872	molecular_function	metal ion binding
E	0051144	biological_process	1,2-propanediol catabolic process
E	0051536	molecular_function	iron-sulfur cluster binding
E	0051539	molecular_function	4 iron, 4 sulfur cluster binding
F	0031469	cellular_component	bacterial microcompartment
F	0031472	cellular_component	propanediol degradation polyhedral organelle
F	0046872	molecular_function	metal ion binding
F	0051144	biological_process	1,2-propanediol catabolic process
F	0051536	molecular_function	iron-sulfur cluster binding
F	0051539	molecular_function	4 iron, 4 sulfur cluster binding
G	0031469	cellular_component	bacterial microcompartment
G	0031472	cellular_component	propanediol degradation polyhedral organelle
G	0046872	molecular_function	metal ion binding
G	0051144	biological_process	1,2-propanediol catabolic process
G	0051536	molecular_function	iron-sulfur cluster binding
G	0051539	molecular_function	4 iron, 4 sulfur cluster binding
H	0031469	cellular_component	bacterial microcompartment
H	0031472	cellular_component	propanediol degradation polyhedral organelle
H	0046872	molecular_function	metal ion binding
H	0051144	biological_process	1,2-propanediol catabolic process
H	0051536	molecular_function	iron-sulfur cluster binding
H	0051539	molecular_function	4 iron, 4 sulfur cluster binding
I	0031469	cellular_component	bacterial microcompartment
I	0031472	cellular_component	propanediol degradation polyhedral organelle
I	0046872	molecular_function	metal ion binding
I	0051144	biological_process	1,2-propanediol catabolic process
I	0051536	molecular_function	iron-sulfur cluster binding
I	0051539	molecular_function	4 iron, 4 sulfur cluster binding
J	0031469	cellular_component	bacterial microcompartment
J	0031472	cellular_component	propanediol degradation polyhedral organelle
J	0046872	molecular_function	metal ion binding
J	0051144	biological_process	1,2-propanediol catabolic process
J	0051536	molecular_function	iron-sulfur cluster binding
J	0051539	molecular_function	4 iron, 4 sulfur cluster binding
K	0031469	cellular_component	bacterial microcompartment
K	0031472	cellular_component	propanediol degradation polyhedral organelle
K	0046872	molecular_function	metal ion binding
K	0051144	biological_process	1,2-propanediol catabolic process
K	0051536	molecular_function	iron-sulfur cluster binding
K	0051539	molecular_function	4 iron, 4 sulfur cluster binding
L	0031469	cellular_component	bacterial microcompartment
L	0031472	cellular_component	propanediol degradation polyhedral organelle
L	0046872	molecular_function	metal ion binding
L	0051144	biological_process	1,2-propanediol catabolic process
L	0051536	molecular_function	iron-sulfur cluster binding
L	0051539	molecular_function	4 iron, 4 sulfur cluster binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	7
Details	BINDING SITE FOR RESIDUE SO4 A 201

Chain	Residue
A	GLU9
A	LYS41
A	PHE130
A	GLY131
A	ILE132
A	GLY133
A	GLY134

site_id	AC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL A 202

Chain	Residue
A	PRO79
A	SER80

site_id	AC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 B 201

Chain	Residue
B	GLU9
B	LYS41
B	PHE130
B	GLY131
B	ILE132
B	GLY133

site_id	AC4
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL B 202

Chain	Residue
B	THR36

site_id	AC5
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL B 203

Chain	Residue
B	SER80

site_id	AC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE SO4 C 201

Chain	Residue
C	GLU9
C	LYS41
C	PHE130
C	GLY131
C	ILE132
C	GLY133
C	GLY134

site_id	AC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 C 202

Chain	Residue
A	TYR137
C	MET17
C	THR36
C	PHE42

site_id	AC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL C 203

Chain	Residue
C	PRO79
C	SER80

site_id	AC9
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 D 201

Chain	Residue
D	LYS41
D	PHE130
D	GLY131
D	ILE132
D	GLY133
D	GLY134

site_id	BC1
Number of Residues	7
Details	BINDING SITE FOR RESIDUE SO4 E 201

Chain	Residue
E	GLU9
E	LYS41
E	PHE130
E	GLY131
E	ILE132
E	GLY133
E	GLY134

site_id	BC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL E 202

Chain	Residue
E	HIS78
E	PRO79
E	SER80

site_id	BC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL F 201

Chain	Residue
F	HIS78
F	SER80
F	VAL116

site_id	BC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 G 201

Chain	Residue
G	GLU9
G	LYS41
G	PHE130
G	GLY131
G	ILE132
G	GLY133

site_id	BC5
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL G 202

Chain	Residue
G	PRO79
G	SER80

site_id	BC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE SO4 H 201

Chain	Residue
H	GLU9
H	ILE37
H	LYS41
H	PHE130
H	GLY131
H	ILE132
H	GLY133

site_id	BC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL H 202

Chain	Residue
H	HIS78
H	SER80
H	VAL116

site_id	BC8
Number of Residues	7
Details	BINDING SITE FOR RESIDUE SO4 I 201

Chain	Residue
I	GLU9
I	ILE37
I	PHE130
I	GLY131
I	ILE132
I	GLY133
I	GLY134

site_id	BC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL I 202

Chain	Residue
I	PRO79
I	SER80

site_id	CC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 J 201

Chain	Residue
J	GLU9
J	LYS41
J	PHE130
J	GLY131
J	ILE132
J	GLY133

site_id	CC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL J 202

Chain	Residue
J	SER80

site_id	CC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE SO4 K 201

Chain	Residue
K	GLU9
K	LYS41
K	PHE130
K	GLY131
K	ILE132
K	GLY133
K	GLY134

site_id	CC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL K 202

Chain	Residue
K	PRO79
K	SER80

site_id	CC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 L 201

Chain	Residue
L	GLU9
L	LYS41
L	GLY131
L	ILE132
L	GLY133
L	GLY134

site_id	CC6
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL L 202

Chain	Residue
L	SER80

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	984
Details	Domain: {"description":"BMC 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU01278","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	1032
Details	Domain: {"description":"BMC 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU01278","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	12
Details	Binding site: {"evidences":[{"source":"PubMed","id":"20870711","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)