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4DA6

Crystal structure of the hexameric purine nucleoside phosphorylase from Bacillus subtilis in complex with ganciclovir

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004731molecular_functionpurine-nucleoside phosphorylase activity
A0005829cellular_componentcytosol
A0006139biological_processnucleobase-containing compound metabolic process
A0006152biological_processpurine nucleoside catabolic process
A0009116biological_processnucleoside metabolic process
A0009164biological_processnucleoside catabolic process
A0016740molecular_functiontransferase activity
A0016757molecular_functionglycosyltransferase activity
A0016763molecular_functionpentosyltransferase activity
A0042278biological_processpurine nucleoside metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues17
DetailsBINDING SITE FOR RESIDUE GA2 A 301
ChainResidue
AHIS4
AGLU180
ASER202
AVAL205
ACL304
AHOH444
AHOH459
AHOH509
AHOH545
AARG43
AMET64
ASER90
ACYS91
AGLY92
APHE159
AVAL177
AMET179

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DMS A 302
ChainResidue
AVAL118
AALA119
AGLY121
AASP163
AHOH492
AHOH515

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 303
ChainResidue
AGLN11
AASN35
AGLU37
ATHR49
ALYS56

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 304
ChainResidue
AARG87
ASER90
AGA2301
AHOH535

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 305
ChainResidue
APHE154
AASN161
ASER164

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 306
ChainResidue
ALYS55
ALYS56
ALYS56

site_idAC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 307
ChainResidue
AGLU41

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 308
ChainResidue
AGLN165
ALYS168
AHOH487
AHOH550

Functional Information from PROSITE/UniProt
site_idPS01232
Number of Residues16
DetailsPNP_UDP_1 Purine and other phosphorylases family 1 signature. GtGMGvPSiSIyvnEL
ChainResidueDetails
AGLY61-LEU76

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"HAMAP-Rule","id":"MF_01627","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P50389","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsBinding site: {"description":"in other chain","evidences":[{"source":"UniProtKB","id":"P50389","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsSite: {"description":"Important for catalytic activity","evidences":[{"source":"HAMAP-Rule","id":"MF_01627","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

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PDB entries from 2025-12-24

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