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4D6R

crystal structure of human JMJD2D in complex with N-OXALYLGLYCINE and bound o-toluenesulfonamide

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1334
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NI A 1335
ChainResidue
AHIS192
AGLU194
AHIS280
AOGA1340
AHOH2312

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1336
ChainResidue
APHE31
ALYS150
AGLN151
ATRP152
AASN153
AHIS156
AHOH2051

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 1337
ChainResidue
AASN13
AMET19
ALYS255
AGLY258
AIEJ1341
AIEJ1342
AHOH2005
AHOH2382

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1338
ChainResidue
APRO113
AASN128
ATRP185
ALYS186
AHOH2231
AHOH2258

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1339
ChainResidue
ATYR181
AGLU194
AALA292
AASN294
AOGA1340
AHOH2312

site_idAC7
Number of Residues13
DetailsBINDING SITE FOR RESIDUE OGA A 1340
ChainResidue
ATYR136
APHE189
AHIS192
AGLU194
ASER200
AASN202
ALYS210
AHIS280
AALA292
ANI1335
AEDO1339
AHOH2312
AHOH2424

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE IEJ A 1341
ChainResidue
AMET19
AILE20
ALYS255
AEDO1337
AHOH2425

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE IEJ A 1342
ChainResidue
AASN13
AASN17
ALYS255
AILE259
APRO260
APHE261
AEDO1337

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE IEJ A 1343
ChainResidue
ALYS25
APHE28
AASN29
APRO54
AGLU56
ATRP57
AGLN151
AHOH2133

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

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PDB entries from 2025-06-11

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