4CCL
X-Ray structure of E. coli ycfD
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005515 | molecular_function | protein binding |
| A | 0008198 | molecular_function | ferrous iron binding |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016706 | molecular_function | 2-oxoglutarate-dependent dioxygenase activity |
| A | 0030961 | biological_process | peptidyl-arginine hydroxylation |
| A | 0042803 | molecular_function | protein homodimerization activity |
| A | 0043687 | biological_process | post-translational protein modification |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0051213 | molecular_function | dioxygenase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0008198 | molecular_function | ferrous iron binding |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016706 | molecular_function | 2-oxoglutarate-dependent dioxygenase activity |
| B | 0030961 | biological_process | peptidyl-arginine hydroxylation |
| B | 0042803 | molecular_function | protein homodimerization activity |
| B | 0043687 | biological_process | post-translational protein modification |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0051213 | molecular_function | dioxygenase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 3 |
| Details | binding site for residue MN A 1373 |
| Chain | Residue |
| A | HIS125 |
| A | ASP127 |
| A | HIS187 |
| site_id | AC2 |
| Number of Residues | 1 |
| Details | binding site for residue MN A 1374 |
| Chain | Residue |
| A | ASP11 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 A 1375 |
| Chain | Residue |
| A | TRP142 |
| A | LEU82 |
| A | MSE112 |
| A | SER114 |
| A | VAL122 |
| A | ARG140 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 1376 |
| Chain | Residue |
| A | HIS329 |
| A | PRO331 |
| A | ASP349 |
| A | ALA350 |
| A | HOH2054 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 1377 |
| Chain | Residue |
| A | ARG15 |
| A | HIS16 |
| A | VAL22 |
| A | HOH2055 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 1378 |
| Chain | Residue |
| A | ARG101 |
| A | ASN339 |
| A | ILE340 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 1379 |
| Chain | Residue |
| A | GLU222 |
| A | GLY225 |
| B | ARG208 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | binding site for residue MN B 1373 |
| Chain | Residue |
| B | HIS56 |
| B | ASP58 |
| site_id | AC9 |
| Number of Residues | 1 |
| Details | binding site for residue MN B 1374 |
| Chain | Residue |
| B | HIS329 |
| site_id | AD1 |
| Number of Residues | 10 |
| Details | binding site for residue SO4 B 1375 |
| Chain | Residue |
| B | LEU82 |
| B | MSE112 |
| B | SER114 |
| B | ARG140 |
| B | TRP142 |
| B | HOH2030 |
| B | HOH2050 |
| B | HOH2052 |
| B | HOH2055 |
| B | HOH2074 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 B 1376 |
| Chain | Residue |
| B | ARG15 |
| B | HIS16 |
| B | VAL22 |
| B | HOH2017 |
| site_id | AD3 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 B 1377 |
| Chain | Residue |
| B | ASN339 |
| B | ILE340 |
| site_id | AD4 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 B 1378 |
| Chain | Residue |
| A | ASP241 |
| A | ASP291 |
| A | HOH2037 |
| B | ARG313 |
| B | GLY315 |
| B | ARG330 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 10 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"24814345","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"24530688","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
