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4CCL

X-Ray structure of E. coli ycfD

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0008198molecular_functionferrous iron binding
A0016706molecular_function2-oxoglutarate-dependent dioxygenase activity
A0042803molecular_functionprotein homodimerization activity
A0043687biological_processpost-translational protein modification
A0046872molecular_functionmetal ion binding
A0051213molecular_functiondioxygenase activity
B0005515molecular_functionprotein binding
B0008198molecular_functionferrous iron binding
B0016706molecular_function2-oxoglutarate-dependent dioxygenase activity
B0042803molecular_functionprotein homodimerization activity
B0043687biological_processpost-translational protein modification
B0046872molecular_functionmetal ion binding
B0051213molecular_functiondioxygenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue MN A 1373
ChainResidue
AHIS125
AASP127
AHIS187

site_idAC2
Number of Residues1
Detailsbinding site for residue MN A 1374
ChainResidue
AASP11

site_idAC3
Number of Residues6
Detailsbinding site for residue SO4 A 1375
ChainResidue
ATRP142
ALEU82
AMSE112
ASER114
AVAL122
AARG140

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 1376
ChainResidue
AHIS329
APRO331
AASP349
AALA350
AHOH2054

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 1377
ChainResidue
AARG15
AHIS16
AVAL22
AHOH2055

site_idAC6
Number of Residues3
Detailsbinding site for residue SO4 A 1378
ChainResidue
AARG101
AASN339
AILE340

site_idAC7
Number of Residues3
Detailsbinding site for residue SO4 A 1379
ChainResidue
AGLU222
AGLY225
BARG208

site_idAC8
Number of Residues2
Detailsbinding site for residue MN B 1373
ChainResidue
BHIS56
BASP58

site_idAC9
Number of Residues1
Detailsbinding site for residue MN B 1374
ChainResidue
BHIS329

site_idAD1
Number of Residues10
Detailsbinding site for residue SO4 B 1375
ChainResidue
BLEU82
BMSE112
BSER114
BARG140
BTRP142
BHOH2030
BHOH2050
BHOH2052
BHOH2055
BHOH2074

site_idAD2
Number of Residues4
Detailsbinding site for residue SO4 B 1376
ChainResidue
BARG15
BHIS16
BVAL22
BHOH2017

site_idAD3
Number of Residues2
Detailsbinding site for residue SO4 B 1377
ChainResidue
BASN339
BILE340

site_idAD4
Number of Residues6
Detailsbinding site for residue SO4 B 1378
ChainResidue
AASP241
AASP291
AHOH2037
BARG313
BGLY315
BARG330

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000305|PubMed:24814345
ChainResidueDetails
ASER114
AARG140
AHIS187
BSER114
BARG140
BHIS187

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:24530688
ChainResidueDetails
AHIS125
AASP127
BHIS125
BASP127

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PDB entries from 2024-10-30

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