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4CAZ

CRYSTAL STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE FROM Pseudomonas aeruginosa IN COMPLEX WITH NADH

Functional Information from GO Data
ChainGOidnamespacecontents
A0008802molecular_functionbetaine-aldehyde dehydrogenase (NAD+) activity
A0016491molecular_functionoxidoreductase activity
A0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
A0019285biological_processglycine betaine biosynthetic process from choline
A0046872molecular_functionmetal ion binding
B0008802molecular_functionbetaine-aldehyde dehydrogenase (NAD+) activity
B0016491molecular_functionoxidoreductase activity
B0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
B0019285biological_processglycine betaine biosynthetic process from choline
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1491
ChainResidue
AARG70
AARG74
AASP77

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1492
ChainResidue
APHE331
AARG357
AEDO1494
BASP264
BALA265
BEDO1494

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 1491
ChainResidue
BARG14
BVAL16
BGLU17
BARG48

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 1492
ChainResidue
BGLU446
BPRO448
BEDO1495
BPE41505
BGOL1512
BHOH2065

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 1493
ChainResidue
BARG140
BALA169
BHOH2042

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1493
ChainResidue
AMET276
AGLY445
APE41511
AHOH2191

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1494
ChainResidue
APHE331
APRO332
AGLU335
AEDO1492
BSER297
BARG301

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 1494
ChainResidue
AEDO1492
BASP266
BLEU267
BASP268
BARG301
BLYS305

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 1495
ChainResidue
BTHR108
BSER447
BEDO1492
BPE41505
BK1508
BGOL1511

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1495
ChainResidue
AILE123
AARG140
APRO142
AALA169
AHOH2112

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1496
ChainResidue
AASP360
AGLY361
AALA362

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 1496
ChainResidue
BGLN7
BLYS187

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 1497
ChainResidue
BARG131
BTHR133
BGLU482
BASP485

site_idBC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 1498
ChainResidue
BALA300
BGLU303

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1497
ChainResidue
AARG43
ATRP215
AHOH2051

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 1498
ChainResidue
AGLU126
AHOH2114

site_idBC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 1499
ChainResidue
AASP423
AARG426

site_idBC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 1499
ChainResidue
BASN409
BARG433

site_idCC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO A 1527
ChainResidue
AEDO1501

site_idCC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1501
ChainResidue
AGLU303
AARG350
AEDO1527

site_idCC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 1500
ChainResidue
BTYR413
BGLN458
BHOH2115
BHOH2163
BHOH2198

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 1501
ChainResidue
BPHE262
BGLU401
BASP402
BARG433

site_idCC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1502
ChainResidue
AARG301
AASP317
AASP320

site_idCC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1503
ChainResidue
AASN31
AASP317
AEDO1504
AGOL1524

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1504
ChainResidue
AALA265
ALEU267
AARG301
AASP317
AGLN319
AEDO1503

site_idCC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 1502
ChainResidue
BASP266
BHOH2135

site_idCC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1505
ChainResidue
AGLY462
AARG463
AARG475
AHOH2276
AHOH2278
AGLU248
AGLY455

site_idDC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1506
ChainResidue
AALA65
AVAL120
APRO121
AILE123
AGOL1522
BPRO129
BGLU450

site_idDC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1507
ChainResidue
AARG139
AHIS432
AGOL1522
AHOH2257
AHOH2291
BPRO129
BHOH2077

site_idDC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1508
ChainResidue
AASP379
AASP380
AARG385
AASP410

site_idDC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1509
ChainResidue
AGLU401
AILE405
AARG426
AARG433

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1510
ChainResidue
AALA265
AASP266
ATHR421
AGLN422
AASN442

site_idDC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 1504
ChainResidue
BGLU252
BGOL1511
BTXE1514

site_idDC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PE4 B 1505
ChainResidue
BSER103
BMET276
BTRP444
BGLU446
BVAL489
BEDO1492
BEDO1495
BK1508

site_idDC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PE4 A 1511
ChainResidue
AVAL104
AGLU446
AEDO1493
AK1514

site_idDC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 1512
ChainResidue
ATHR26
AILE27
AASP93
AVAL180
AHOH2039

site_idEC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 1506
ChainResidue
BTHR26
BILE27
BASP93
BVAL180
BHOH2018

site_idEC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 1513
ChainResidue
AGLU223
ALEU246
AGLU248
ALYS457
AGLY460

site_idEC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 1507
ChainResidue
BGLU223
BLEU246
BGLU248
BLYS457
BGLY460

site_idEC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE K A 1514
ChainResidue
APE41511

site_idEC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE K B 1508
ChainResidue
BEDO1495
BPE41505

site_idEC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1516
ChainResidue
ALEU315
AASP317
AASP320
AASN322
ATHR323
AHOH2205

site_idEC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 1517
ChainResidue
AARG378
AASP380

site_idEC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE GOL B 1509
ChainResidue
BHOH2200

site_idEC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 1510
ChainResidue
BGLU5
BGLU6
BGLN7
BLYS8
BTYR15

site_idFC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1518
ChainResidue
AGLU5
AGLU6
AGLN7
ALYS8
ATYR15
AGOL1519
AHOH2143

site_idFC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1519
ChainResidue
APHE4
AGLN7
ALYS187
AGOL1518
AHOH2012

site_idFC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1520
ChainResidue
AARG139
AGLU141
AHIS432
ALEU434
ALYS477

site_idFC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE GOL A 1521
ChainResidue
AASP199

site_idFC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1522
ChainResidue
AALA61
AMET63
AALA65
AARG68
AEDO1506
AEDO1507
BARG131

site_idFC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 1511
ChainResidue
BGLN157
BEDO1495
BEDO1504
BHOH2090

site_idFC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1523
ChainResidue
ATRP161
AGLU252
ALEU415
AGLU464
AGOL1525
ATXE1526
AHOH2266

site_idFC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 1512
ChainResidue
AHOH2071
BASP111
BPRO448
BALA449
BGLU450
BEDO1492
BHOH2065

site_idFC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 1513
ChainResidue
BALA30
BASP317
BPHE363
BTYR368

site_idGC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1524
ChainResidue
AALA30
AASP317
AALA362
APHE363
ATYR368
AEDO1503

site_idGC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1525
ChainResidue
ATYR154
AGLN157
ATRP161
AGOL1523
AHOH2134
AHOH2294

site_idGC3
Number of Residues28
DetailsBINDING SITE FOR RESIDUE TXE A 1526
ChainResidue
AILE149
AGLY150
AALA151
ATRP152
AASN153
ALYS176
ASER178
AGLU179
AGLY209
AGLY213
AGLN214
APHE227
ATHR228
AGLY229
AGLY230
ATHR233
AVAL237
AGLU252
ALEU253
AGLY254
ACYS286
AGLU387
APHE389
AGOL1523
AHOH2134
AHOH2140
AHOH2157
AHOH2295

site_idGC4
Number of Residues25
DetailsBINDING SITE FOR RESIDUE TXE B 1514
ChainResidue
BILE149
BGLY150
BALA151
BTRP152
BASN153
BLYS176
BSER178
BGLU179
BGLY209
BGLY213
BGLN214
BPHE227
BTHR228
BGLY229
BGLY230
BTHR233
BVAL237
BGLU252
BLEU253
BGLY254
BCYS286
BGLU387
BPHE389
BEDO1504
BHOH2095

Functional Information from PROSITE/UniProt
site_idPS00070
Number of Residues12
DetailsALDEHYDE_DEHYDR_CYS Aldehyde dehydrogenases cysteine active site. FfSSGQVCTNGT
ChainResidueDetails
APHE279-THR290

site_idPS00687
Number of Residues8
DetailsALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. MELGGKSP
ChainResidueDetails
AMET251-PRO258

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Charge relay system => ECO:0000255|HAMAP-Rule:MF_00804, ECO:0000269|PubMed:19013472
ChainResidueDetails
ALYS162
AGLU464
BLYS162
BGLU464

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_00804, ECO:0000269|PubMed:19013472
ChainResidueDetails
AGLU252
BGLU252

site_idSWS_FT_FI3
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000305|PubMed:21732915
ChainResidueDetails
ACYS286
BCYS286

site_idSWS_FT_FI4
Number of Residues14
DetailsBINDING:
ChainResidueDetails
ATHR26
BASP93
BVAL180
BLEU246
BLYS457
BGLY460
AILE27
AASP93
AVAL180
ALEU246
ALYS457
AGLY460
BTHR26
BILE27

site_idSWS_FT_FI5
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:21732915, ECO:0007744|PDB:2WOX
ChainResidueDetails
AGLY150
BGLU387
ALYS176
AGLY209
AGLY230
AGLU387
BGLY150
BLYS176
BGLY209
BGLY230

site_idSWS_FT_FI6
Number of Residues2
DetailsBINDING: covalent => ECO:0000269|PubMed:21732915, ECO:0007744|PDB:2WOX
ChainResidueDetails
ACYS286
BCYS286

site_idSWS_FT_FI7
Number of Residues2
DetailsSITE: Seems to be a necessary countercharge to the potassium cations
ChainResidueDetails
AGLU248
BGLU248

site_idSWS_FT_FI8
Number of Residues2
DetailsMOD_RES: Cysteine sulfenic acid (-SOH) => ECO:0000255|HAMAP-Rule:MF_00804, ECO:0000269|PubMed:19013472
ChainResidueDetails
ACYS286
BCYS286

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PDB entries from 2024-09-11

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