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4C8M

Binary complex of the large fragment of DNA polymerase I from Thermus Aquaticus with the aritificial base pair d5SICS-dNaM at the postinsertion site (sequence context 2)

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 1216
ChainResidue
CHOH2216
CHOH2217
CHOH2218
CHOH2219
CHOH2220
CHOH2221

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C 1217
ChainResidue
CDC210
BDC106
BHOH2113
CDC209

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1833
ChainResidue
ASER674
AALA675
AHIS676
ATYR686
AHOH2262

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1834
ChainResidue
AARG393
AARG419
AHOH2050

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1112
ChainResidue
BHOH2113
BHOH2114
BHOH2115
BHOH2116
BHOH2117
BHOH2118

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 1835
ChainResidue
AARG411
AASN415
AHOH2053
AHOH2317

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 1836
ChainResidue
AARG431
AARG435

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1837
ChainResidue
AMET317
ATRP318
AALA319
AASP320
AGLU465
AHIS554

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1838
ChainResidue
AGLN613
AHIS639
AARG659
ALYS663
AHOH2215

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 1839
ChainResidue
ATRP428
ATYR811
AHOH2084
AHOH2318

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues422
DetailsRegion: {"description":"Polymerase","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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