4C5M
Structure of the pyridoxal kinase from Staphylococcus aureus in complex with AMP-PCP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0008972 | molecular_function | phosphomethylpyrimidine kinase activity |
A | 0009228 | biological_process | thiamine biosynthetic process |
A | 0016301 | molecular_function | kinase activity |
B | 0000166 | molecular_function | nucleotide binding |
B | 0008972 | molecular_function | phosphomethylpyrimidine kinase activity |
B | 0009228 | biological_process | thiamine biosynthetic process |
B | 0016301 | molecular_function | kinase activity |
C | 0000166 | molecular_function | nucleotide binding |
C | 0008972 | molecular_function | phosphomethylpyrimidine kinase activity |
C | 0009228 | biological_process | thiamine biosynthetic process |
C | 0016301 | molecular_function | kinase activity |
D | 0000166 | molecular_function | nucleotide binding |
D | 0008972 | molecular_function | phosphomethylpyrimidine kinase activity |
D | 0009228 | biological_process | thiamine biosynthetic process |
D | 0016301 | molecular_function | kinase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE ACP A 500 |
Chain | Residue |
A | ASN139 |
A | GLN205 |
A | ASN209 |
A | GLY213 |
A | LYS238 |
A | ILE245 |
A | SO41280 |
A | HOH2161 |
A | HOH2162 |
A | HOH2164 |
A | HOH2165 |
A | LYS176 |
A | HOH2185 |
A | HOH2194 |
A | GLY178 |
A | LYS179 |
A | SER186 |
A | ASP188 |
A | ASP202 |
A | MET203 |
A | PHE204 |
site_id | AC2 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE ACP B 500 |
Chain | Residue |
B | ASN139 |
B | LYS176 |
B | GLY178 |
B | LYS179 |
B | SER186 |
B | ASP188 |
B | ASP202 |
B | MET203 |
B | PHE204 |
B | GLN205 |
B | ASN209 |
B | GLY213 |
B | LYS238 |
B | ILE245 |
B | HOH2151 |
B | HOH2152 |
B | HOH2154 |
B | HOH2177 |
B | HOH2181 |
site_id | AC3 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE ACP C 500 |
Chain | Residue |
C | ASN139 |
C | LYS176 |
C | LYS179 |
C | SER186 |
C | ASP188 |
C | ASP202 |
C | MET203 |
C | PHE204 |
C | GLN205 |
C | ASN209 |
C | GLY213 |
C | LYS238 |
C | ILE245 |
C | HOH2102 |
C | HOH2103 |
C | HOH2131 |
site_id | AC4 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE ACP D 500 |
Chain | Residue |
D | LYS176 |
D | GLY178 |
D | LYS179 |
D | SER186 |
D | ASP188 |
D | ASP202 |
D | MET203 |
D | PHE204 |
D | GLN205 |
D | ASN209 |
D | GLY213 |
D | LYS238 |
D | ILE245 |
D | SO41280 |
D | HOH2128 |
D | HOH2129 |
D | HOH2152 |
D | HOH2167 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 B 1277 |
Chain | Residue |
B | GLN205 |
B | GLN206 |
B | SER207 |
B | HOH2192 |
B | HOH2247 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 B 1278 |
Chain | Residue |
B | TYR208 |
B | LYS250 |
B | HOH2159 |
B | HOH2160 |
B | HOH2248 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 D 1277 |
Chain | Residue |
A | HOH2273 |
D | GLN205 |
D | GLN206 |
D | SER207 |
D | HOH2250 |
site_id | AC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 C 1277 |
Chain | Residue |
C | TYR208 |
C | LYS250 |
C | HOH2199 |
site_id | AC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 C 1278 |
Chain | Residue |
C | GLN205 |
C | GLN206 |
C | SER207 |
C | HOH2144 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 A 1277 |
Chain | Residue |
A | GLY72 |
A | ASN98 |
A | HOH2107 |
site_id | BC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 A 1278 |
Chain | Residue |
A | GLN205 |
A | GLN206 |
A | SER207 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 1279 |
Chain | Residue |
A | HIS210 |
A | VAL255 |
A | SO41280 |
A | HOH2218 |
site_id | BC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 B 1279 |
Chain | Residue |
B | TYR223 |
B | LYS228 |
B | TYR263 |
B | HOH2205 |
B | HOH2235 |
B | HOH2249 |
site_id | BC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 B 1280 |
Chain | Residue |
B | LYS5 |
B | ASN98 |
B | HOH2010 |
B | HOH2097 |
site_id | BC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 D 1278 |
Chain | Residue |
D | LYS5 |
D | GLY72 |
D | ASN98 |
D | HOH2004 |
D | HOH2073 |
site_id | BC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 C 1279 |
Chain | Residue |
C | PRO57 |
C | MET58 |
C | HOH2042 |
site_id | BC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 D 1279 |
Chain | Residue |
A | HIS268 |
A | HOH2267 |
D | THR83 |
D | GLU84 |
D | ASN121 |
D | HOH2083 |
site_id | BC9 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 D 1280 |
Chain | Residue |
D | HIS210 |
D | GLY211 |
D | ALA212 |
D | GLY213 |
D | CYS214 |
D | ACP500 |
D | HOH2193 |
D | HOH2252 |
D | HOH2254 |
site_id | CC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 A 1280 |
Chain | Residue |
A | HIS210 |
A | GLY211 |
A | ALA212 |
A | GLY213 |
A | CYS214 |
A | ACP500 |
A | SO41279 |
site_id | CC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 D 1281 |
Chain | Residue |
D | LYS185 |
D | TYR187 |
D | HOH2165 |
D | HOH2179 |
site_id | CC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 C 1280 |
Chain | Residue |
C | GLY72 |
C | ASN98 |
C | HOH2009 |
C | HOH2055 |