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4C07

Crystal structure of M. musculus protein arginine methyltransferase PRMT6 with CaCl2 at 1.5 Angstroms

Functional Information from GO Data
ChainGOidnamespacecontents
A0000122biological_processnegative regulation of transcription by RNA polymerase II
A0003682molecular_functionchromatin binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005730cellular_componentnucleolus
A0006281biological_processDNA repair
A0006325biological_processchromatin organization
A0006338biological_processchromatin remodeling
A0008168molecular_functionmethyltransferase activity
A0008469molecular_functionhistone arginine N-methyltransferase activity
A0010821biological_processregulation of mitochondrion organization
A0016274molecular_functionprotein-arginine N-methyltransferase activity
A0018216biological_processpeptidyl-arginine methylation
A0032259biological_processmethylation
A0035241molecular_functionprotein-arginine omega-N monomethyltransferase activity
A0035242molecular_functionprotein-arginine omega-N asymmetric methyltransferase activity
A0036211biological_processprotein modification process
A0042054molecular_functionhistone methyltransferase activity
A0042393molecular_functionhistone binding
A0044020molecular_functionhistone H4R3 methyltransferase activity
A0045892biological_processnegative regulation of DNA-templated transcription
A0070611molecular_functionhistone H3R2 methyltransferase activity
A0070612molecular_functionhistone H2AR3 methyltransferase activity
A0090398biological_processcellular senescence
A1901796biological_processregulation of signal transduction by p53 class mediator
A2000059biological_processnegative regulation of ubiquitin-dependent protein catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 1377
ChainResidue
AGLU158
AMET160
AHOH2014
AHOH2084
AHOH2089
AHOH2090

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA A 1378
ChainResidue
AGLU167
AHOH2097
AHOH2252

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA A 1379
ChainResidue
AGLN242
AASP243
AHOH2146

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 1380
ChainResidue
AGLY275
AHOH2167
AHOH2178
AHOH2254
AHOH2255

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 1381
ChainResidue
AARG255
AHOH2162
AHOH2163
AHOH2164
AHOH2168
AHOH2256
AHOH2257

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA A 1382
ChainResidue
AASP339
AHOH2191
AHOH2258

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000250
ChainResidueDetails
AGLU158
AGLU167

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AHIS60
AARG69
AGLY93
AGLU115
AGLU144

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Asymmetric dimethylarginine; by autocatalysis => ECO:0000250
ChainResidueDetails
AARG38

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PDB entries from 2024-07-17

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