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4BUC

CRYSTAL STRUCTURE OF MURD LIGASE FROM THERMOTOGA MARITIMA IN APO FORM

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0008360biological_processregulation of cell shape
A0008764molecular_functionUDP-N-acetylmuramoylalanine-D-glutamate ligase activity
A0009058biological_processbiosynthetic process
A0009252biological_processpeptidoglycan biosynthetic process
A0016874molecular_functionligase activity
A0016881molecular_functionacid-amino acid ligase activity
A0051301biological_processcell division
A0071555biological_processcell wall organization
B0000166molecular_functionnucleotide binding
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0008360biological_processregulation of cell shape
B0008764molecular_functionUDP-N-acetylmuramoylalanine-D-glutamate ligase activity
B0009058biological_processbiosynthetic process
B0009252biological_processpeptidoglycan biosynthetic process
B0016874molecular_functionligase activity
B0016881molecular_functionacid-amino acid ligase activity
B0051301biological_processcell division
B0071555biological_processcell wall organization
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A 1000
ChainResidue
ALYS133
ASER177
ASER178
APHE179
AASP203
ATYR211
ALYS215

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 A 1001
ChainResidue
AMSE279
AASN282
AGOL1202
AGLY132
ATHR135

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A 1002
ChainResidue
AASN196
AASN231
AHIS233
ATYR277
AGLU281
AHOH2093
AHOH2094

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 A 1003
ChainResidue
AASP120
ALYS123
AGLU168
AHOH2056
AHOH2084
AHOH2169

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A 1004
ChainResidue
ALYS30
ASER31
ASER88
APRO89
ANH41501
AHOH2001
AHOH2003

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A 1005
ChainResidue
AASP213
AARG238
AGLU404
AMSE407
AHIS445
AHOH2160
AHOH2166

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 A 1006
ChainResidue
ATYR86
ALYS107
ASER109
APHE114
AASP117
AGLU185

site_idAC8
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PO4 A 1007
ChainResidue
AALA52
AHIS75
AILE91
APO31008
ACL1402
AHOH2040
BALA52
BGLY73
BGLY74
BHOH2017

site_idAC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO3 A 1008
ChainResidue
ASER96
AMSE97
APO41007
AHOH2040
BGLY74
BHIS75
BSER96
BPO31008

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1200
ChainResidue
APHE182
ATRP183
AILE395
AGLU397
AGLU401
AHOH2043

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 1201
ChainResidue
AARG33
ALYS37
APHE62

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1202
ChainResidue
AGLY132
ALYS133
ASER134
ATHR135
APO41001

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 1400
ChainResidue
AGLU111
AGLY155
AALA161
AGLN180
AHOH2004

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 1401
ChainResidue
APHE28
AGLU51
ALYS53

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 1402
ChainResidue
AGLY27
AGLU51
AALA52
AHIS75
APO41007

site_idBC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE NH4 A 1501
ChainResidue
APO41004

site_idBC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 B 1000
ChainResidue
BLYS133
BSER177
BSER178
BPHE179
BASP203
BTYR211
BLYS215
BHOH2031

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 B 1001
ChainResidue
BGLY132
BTHR135
BGLN278
BMSE279
BASN282
BGOL1202

site_idCC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 B 1002
ChainResidue
BASN196
BASN231
BHIS233
BTYR277
BGLU281
BHOH2046
BHOH2047

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 B 1003
ChainResidue
BASP120
BLYS123
BGLU168
BHOH2024

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 B 1004
ChainResidue
BLYS30
BSER31
BPRO89
BNH41501
BHOH2001
BHOH2002

site_idCC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 B 1005
ChainResidue
BASP213
BARG238
BGLU404
BMSE407
BHIS445
BHOH2057
BHOH2084

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 B 1006
ChainResidue
BTYR86
BLYS107
BSER109
BPHE114
BASP117
BGLU185

site_idCC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PO4 B 1007
ChainResidue
AALA52
AGLY73
AGLY74
AHOH2034
BALA52
BHIS75
BILE91
BPO31008
BCL1402
BHOH2020

site_idCC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO3 B 1008
ChainResidue
AGLY74
AHIS75
ASER96
APO31008
BTHR95
BSER96
BMSE97
BPO41007
BHOH2020

site_idCC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 1200
ChainResidue
BPHE182
BTRP183
BGLU397
BGLU401
BHOH2022

site_idCC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 1201
ChainResidue
BARG33
BLYS37
BGLU58
BPHE62

site_idDC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 1202
ChainResidue
BGLY132
BLYS133
BSER134
BTHR135
BPO41001

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 1400
ChainResidue
BGLU111
BGLY155
BPRO160
BALA161
BGLN180

site_idDC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 1401
ChainResidue
BPHE28
BGLU51

site_idDC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 1402
ChainResidue
BGLY27
BGLU51
BALA52
BHIS75
BPO41007

site_idDC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE NH4 B 1501
ChainResidue
BPO41004

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00639","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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