4BQ3
Structural analysis of an exo-beta-agarase
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004565 | molecular_function | beta-galactosidase activity |
| A | 0005975 | biological_process | carbohydrate metabolic process |
| A | 0009341 | cellular_component | beta-galactosidase complex |
| A | 0016020 | cellular_component | membrane |
| A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| A | 0033916 | molecular_function | beta-agarase activity |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0004565 | molecular_function | beta-galactosidase activity |
| B | 0005975 | biological_process | carbohydrate metabolic process |
| B | 0009341 | cellular_component | beta-galactosidase complex |
| B | 0016020 | cellular_component | membrane |
| B | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| B | 0033916 | molecular_function | beta-agarase activity |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0004565 | molecular_function | beta-galactosidase activity |
| C | 0005975 | biological_process | carbohydrate metabolic process |
| C | 0009341 | cellular_component | beta-galactosidase complex |
| C | 0016020 | cellular_component | membrane |
| C | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| C | 0033916 | molecular_function | beta-agarase activity |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0004565 | molecular_function | beta-galactosidase activity |
| D | 0005975 | biological_process | carbohydrate metabolic process |
| D | 0009341 | cellular_component | beta-galactosidase complex |
| D | 0016020 | cellular_component | membrane |
| D | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| D | 0033916 | molecular_function | beta-agarase activity |
| D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE 47N D 1793 |
| Chain | Residue |
| D | PHE493 |
| D | HOH2454 |
| D | HOH2455 |
| D | HOH2526 |
| D | TRP494 |
| D | GLU534 |
| D | ARG539 |
| D | TRP650 |
| D | LEU710 |
| D | GOL1794 |
| D | HOH2124 |
| D | HOH2396 |
| site_id | AC2 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE 47N A 1792 |
| Chain | Residue |
| A | TRP199 |
| A | PHE493 |
| A | TRP494 |
| A | GLU534 |
| A | ARG539 |
| A | TRP650 |
| A | LEU710 |
| A | GOL1793 |
| A | HOH2172 |
| A | HOH2473 |
| A | HOH2560 |
| A | HOH2561 |
| A | HOH2643 |
| site_id | AC3 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE 47N B 1793 |
| Chain | Residue |
| B | LEU175 |
| B | TRP199 |
| B | PHE493 |
| B | TRP494 |
| B | GLU534 |
| B | ARG539 |
| B | TRP650 |
| B | LEU710 |
| B | GOL1794 |
| B | HOH2161 |
| B | HOH2498 |
| B | HOH2579 |
| B | HOH2580 |
| site_id | AC4 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE 47N C 1792 |
| Chain | Residue |
| C | TRP199 |
| C | TRP494 |
| C | GLU534 |
| C | ARG539 |
| C | TRP650 |
| C | LEU710 |
| C | GOL1793 |
| C | HOH2115 |
| C | HOH2387 |
| C | HOH2440 |
| C | HOH2441 |
| C | HOH2512 |
| site_id | AC5 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE GOL D 1794 |
| Chain | Residue |
| D | TRP494 |
| D | GLU534 |
| D | TYR672 |
| D | GLU695 |
| D | HIS697 |
| D | PHE742 |
| D | ARG752 |
| D | GLU757 |
| D | TYR759 |
| D | 47N1793 |
| D | GOL1795 |
| D | HOH2527 |
| site_id | AC6 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE GOL D 1795 |
| Chain | Residue |
| D | ILE331 |
| D | ARG333 |
| D | ASN336 |
| D | ASP362 |
| D | SER363 |
| D | TRP461 |
| D | TRP479 |
| D | ARG752 |
| D | GOL1794 |
| D | HOH2527 |
| site_id | AC7 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE GOL A 1793 |
| Chain | Residue |
| A | TRP494 |
| A | GLU534 |
| A | TYR672 |
| A | GLU695 |
| A | HIS697 |
| A | PHE742 |
| A | ARG752 |
| A | GLU757 |
| A | 47N1792 |
| A | GOL1794 |
| A | HOH2644 |
| site_id | AC8 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE GOL A 1794 |
| Chain | Residue |
| A | ILE331 |
| A | ARG333 |
| A | ASN336 |
| A | ASP362 |
| A | SER363 |
| A | TRP461 |
| A | TRP479 |
| A | ARG752 |
| A | GOL1793 |
| A | HOH2644 |
| site_id | AC9 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE GOL B 1794 |
| Chain | Residue |
| B | ARG752 |
| B | GLU757 |
| B | TYR759 |
| B | 47N1793 |
| B | GOL1795 |
| B | TRP494 |
| B | GLU534 |
| B | TYR672 |
| B | GLU695 |
| B | HIS697 |
| B | PHE742 |
| site_id | BC1 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE GOL B 1795 |
| Chain | Residue |
| B | ILE331 |
| B | ARG333 |
| B | ASN336 |
| B | ASP362 |
| B | SER363 |
| B | TRP461 |
| B | TRP479 |
| B | PHE742 |
| B | ARG752 |
| B | GOL1794 |
| B | HOH2665 |
| site_id | BC2 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE GOL C 1793 |
| Chain | Residue |
| C | TRP494 |
| C | GLU534 |
| C | TYR672 |
| C | GLU695 |
| C | HIS697 |
| C | PHE742 |
| C | ARG752 |
| C | GLU757 |
| C | TYR759 |
| C | 47N1792 |
| C | GOL1794 |
| site_id | BC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL C 1794 |
| Chain | Residue |
| C | ARG333 |
| C | ASN336 |
| C | ASP362 |
| C | TRP461 |
| C | TRP494 |
| C | ARG752 |
| C | GOL1793 |
| C | HOH2385 |
| site_id | BC4 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE GOL C 1795 |
| Chain | Residue |
| C | GLN252 |
| C | ASN253 |
| C | TYR258 |
| C | HIS703 |
| C | GLY704 |
| C | SER705 |
| C | ASP746 |
| C | ASP765 |
| C | VAL766 |
| C | HOH2471 |
| C | HOH2474 |
| C | HOH2497 |
| site_id | BC5 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE GOL D 1796 |
| Chain | Residue |
| D | GLN252 |
| D | ASN253 |
| D | TYR258 |
| D | HIS703 |
| D | ASP746 |
| D | LEU749 |
| D | ASP765 |
| D | VAL766 |
| D | HOH2485 |
| D | HOH2508 |
| site_id | BC6 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE GOL B 1796 |
| Chain | Residue |
| B | GLN252 |
| B | ASN253 |
| B | TYR258 |
| B | HIS703 |
| B | GLY704 |
| B | ASP746 |
| B | ASP765 |
| B | VAL766 |
| B | HOH2616 |
| B | HOH2643 |
| site_id | BC7 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL B 1797 |
| Chain | Residue |
| A | LYS300 |
| A | HOH2292 |
| A | HOH2293 |
| B | PRO285 |
| B | SER286 |
| B | HOH2274 |
| B | HOH2276 |
| B | HOH2666 |
| site_id | BC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL B 1798 |
| Chain | Residue |
| B | TRP479 |
| B | TRP494 |
| B | HOH2365 |
| B | HOH2444 |
| B | HOH2495 |
| B | HOH2646 |
| site_id | BC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL D 1797 |
| Chain | Residue |
| C | LYS300 |
| C | ALA301 |
| C | HOH2224 |
| D | PRO285 |
| D | SER286 |
| D | HOH2205 |
| site_id | CC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL B 1799 |
| Chain | Residue |
| B | HIS92 |
| B | SER93 |
| B | GLN679 |
| B | LYS680 |
| B | HOH2020 |
| B | HOH2599 |
| site_id | CC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL C 1796 |
| Chain | Residue |
| C | PRO360 |
| C | TRP479 |
| C | TRP494 |
| C | HOH2274 |
| C | HOH2342 |
| C | HOH2359 |
| C | HOH2384 |
| site_id | CC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL B 1800 |
| Chain | Residue |
| A | PRO435 |
| B | HIS635 |
| B | TYR636 |
| site_id | CC4 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE GOL A 1795 |
| Chain | Residue |
| A | SER517 |
| A | HIS635 |
| A | TYR636 |
| A | PRO638 |
| B | GLU432 |
| B | THR433 |
| B | TYR434 |
| B | PRO435 |
| B | HOH2408 |
| site_id | CC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL D 1798 |
| Chain | Residue |
| C | GLU432 |
| C | TYR434 |
| D | HIS635 |
| D | TYR636 |
| site_id | CC6 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE GOL A 1796 |
| Chain | Residue |
| A | GLN252 |
| A | ASN253 |
| A | TYR258 |
| A | HIS703 |
| A | ASP746 |
| A | ASP765 |
| A | VAL766 |
| A | HOH2598 |
| A | HOH2623 |
| site_id | CC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL C 1797 |
| Chain | Residue |
| C | HIS630 |
| C | TYR663 |
| C | ASP665 |
| C | HOH2434 |
| C | HOH2447 |
| C | HOH2448 |
| site_id | CC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL B 1801 |
| Chain | Residue |
| B | HIS630 |
| B | GLU634 |
| B | ASP665 |
| B | GOL1802 |
| B | HOH2566 |
| B | HOH2589 |
| site_id | CC9 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL B 1802 |
| Chain | Residue |
| B | LYS662 |
| B | TYR663 |
| B | ALA664 |
| B | ASP665 |
| B | LYS689 |
| B | GOL1801 |
| B | HOH2587 |
| B | HOH2667 |
| site_id | DC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 1797 |
| Chain | Residue |
| A | HIS630 |
| A | ASP665 |
| A | HOH2547 |
| A | HOH2553 |
| A | HOH2567 |
| A | HOH2645 |
| site_id | DC2 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL D 1799 |
| Chain | Residue |
| D | HIS630 |
| D | GLU634 |
| D | TYR663 |
| D | ASP665 |
| D | GOL1800 |
| D | HOH2442 |
| D | HOH2447 |
| D | HOH2460 |
| site_id | DC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL D 1800 |
| Chain | Residue |
| D | HIS630 |
| D | TYR663 |
| D | ALA664 |
| D | ASP665 |
| D | LYS689 |
| D | GOL1799 |
| D | HOH2458 |
| D | HOH2528 |
| site_id | DC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL A 1798 |
| Chain | Residue |
| A | GLN91 |
| A | HIS92 |
| A | SER93 |
| A | TYR94 |
| A | GLN679 |
| A | HOH2072 |
| A | HOH2579 |
| site_id | DC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CA D 1801 |
| Chain | Residue |
| D | ASP50 |
| D | GLU52 |
| D | SER80 |
| D | LYS81 |
| D | ASP228 |
| site_id | DC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA A 1799 |
| Chain | Residue |
| A | ASP50 |
| A | GLU52 |
| A | SER80 |
| A | LYS81 |
| A | ASP228 |
| A | HOH2009 |
| site_id | DC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CA B 1803 |
| Chain | Residue |
| B | ASP50 |
| B | GLU52 |
| B | SER80 |
| B | LYS81 |
| B | ASP228 |
| site_id | DC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA C 1798 |
| Chain | Residue |
| C | ASP50 |
| C | GLU52 |
| C | SER80 |
| C | LYS81 |
| C | ASP228 |
| C | HOH2025 |
