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4BGB

Nucleotide-bound closed form of a putative sugar kinase MK0840 from Methanopyrus kandleri

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005524molecular_functionATP binding
A0006040biological_processamino sugar metabolic process
A0008237molecular_functionmetallopeptidase activity
A0009254biological_processpeptidoglycan turnover
A0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0005524molecular_functionATP binding
B0006040biological_processamino sugar metabolic process
B0008237molecular_functionmetallopeptidase activity
B0009254biological_processpeptidoglycan turnover
B0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ADP A 1352
ChainResidue
ATHR48
AGLY299
ALYS301
AGOL1355
AHOH2125
AHOH2182
AHOH2201
AHOH2203
AHOH2221
AGLY167
ATHR191
AASP195
ATYR206
AASP207
AGLU208
AGLY209
AGLY298

site_idAC2
Number of Residues22
DetailsBINDING SITE FOR RESIDUE ADP B 1352
ChainResidue
BASN47
BTHR48
BGLY49
BGLY167
BALA168
BTHR191
BASP195
BTYR206
BASP207
BGLU208
BGLY209
BGLY298
BGLY299
BLYS301
BGOL1356
BMG1359
BMG1360
BHOH2006
BHOH2134
BHOH2151
BHOH2245
BHOH2293

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 1353
ChainResidue
BALA142
BPRO143
BASP144
BASP146
BVAL171
BHOH2134

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1353
ChainResidue
AALA142
APRO143
AASP144
AASP146
AALA147
AHOH2083
AHOH2224
AHOH2225

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 1354
ChainResidue
BGLU200
BGLU252
BARG256
BARG307
BARG308
BGLU311
BHOH2214
BHOH2294

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1354
ChainResidue
ATHR50
ATYR52
AGLU67
AGLU68
AGLY69
AARG98

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 1355
ChainResidue
AGLN44
AGLY49
AASP51
AARG66
AGLU323
AGLU326
AADP1352
ACA1359
AHOH2006
AHOH2202

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 1355
ChainResidue
BGLY72
BGLU82
BGLU215
BGLU217
BMG1361
BHOH2042
BHOH2171
BHOH2172

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 1356
ChainResidue
BGLN44
BGLY49
BASP51
BADP1352
BMG1360
BHOH2004
BHOH2015

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE K B 1357
ChainResidue
BASP114
BASP138
BGLY141
BPRO143
BASP144
BHOH2095
BHOH2117

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE K B 1358
ChainResidue
BASP138
BALA142
BPHE182
BGLY183
BALA185
BSER243

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE K A 1356
ChainResidue
AASP138
AALA142
APHE182
AGLY183
AALA185
ASER243
AHOH2143

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 1357
ChainResidue
AGLY141
AASP144
AHOH2084
AHOH2100
BARG88

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1358
ChainResidue
AASP165
AHOH2102
AHOH2123
AHOH2125
AHOH2127
AHOH2202

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 1359
ChainResidue
BASP165
BADP1352
BHOH2005
BHOH2132

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1360
ChainResidue
BADP1352
BGOL1356
BHOH2004
BHOH2012
BHOH2014
BHOH2015

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 1361
ChainResidue
BGLY72
BGLU215
BGOL1355
BHOH2172

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 1359
ChainResidue
AGLU323
AGLU326
AGOL1355
AHOH2198
AHOH2201
AHOH2203

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PDB entries from 2024-07-10

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