4BF5
Structure of broad spectrum racemase from Aeromonas hydrophila
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0006522 | biological_process | alanine metabolic process |
| A | 0008784 | molecular_function | alanine racemase activity |
| A | 0016853 | molecular_function | isomerase activity |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0006522 | biological_process | alanine metabolic process |
| B | 0008784 | molecular_function | alanine racemase activity |
| B | 0016853 | molecular_function | isomerase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE PLP A 1350 |
| Chain | Residue |
| A | LYS74 |
| A | HOH2301 |
| A | TYR78 |
| A | HIS204 |
| A | SER245 |
| A | ARG260 |
| A | GLY262 |
| A | GLY263 |
| A | HOH2173 |
| A | HOH2291 |
| site_id | AC2 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE PLP B 1350 |
| Chain | Residue |
| A | HIS417 |
| A | HOH2403 |
| A | HOH2404 |
| B | LYS74 |
| B | TYR78 |
| B | VAL120 |
| B | ARG173 |
| B | HIS204 |
| B | SER245 |
| B | ARG260 |
| B | GLY262 |
| B | GLY263 |
| B | HOH2168 |
| B | HOH2255 |
| B | HOH2385 |
| site_id | AC3 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE GOL B 1418 |
| Chain | Residue |
| A | TYR24 |
| A | HOH2002 |
| B | ASN33 |
| B | GLY399 |
| B | TYR400 |
| B | ASN402 |
| B | LYS404 |
| B | HOH2108 |
| B | HOH2109 |
| B | HOH2426 |
| site_id | AC4 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE GOL B 1419 |
| Chain | Residue |
| A | ALA39 |
| A | SER40 |
| A | ASN41 |
| A | PRO403 |
| A | HOH2051 |
| B | ALA22 |
| B | SER101 |
| B | ASN102 |
| B | GLU103 |
| B | GLU127 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL A 1418 |
| Chain | Residue |
| A | ARG173 |
| A | ASN174 |
| A | HIS204 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL B 1420 |
| Chain | Residue |
| B | ARG173 |
| B | ASN174 |
| B | HIS204 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL A 1419 |
| Chain | Residue |
| A | ARG324 |
| site_id | AC8 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL A 1421 |
| Chain | Residue |
| A | HOH2080 |
| site_id | AC9 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL A 1422 |
| Chain | Residue |
| A | ASP253 |
| site_id | BC1 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL A 1423 |
| Chain | Residue |
| A | ARG109 |
| site_id | BC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL A 1424 |
| Chain | Residue |
| A | GLY337 |
| A | HOH2214 |
| A | HOH2218 |
| site_id | BC3 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL B 1421 |
| Chain | Residue |
| B | ASP253 |
| site_id | BC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL B 1422 |
| Chain | Residue |
| B | LYS210 |
| B | HOH2299 |
| site_id | BC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL B 1423 |
| Chain | Residue |
| A | GLY49 |
| A | ARG408 |
| B | SER272 |
| site_id | BC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL B 1424 |
| Chain | Residue |
| B | HIS414 |
| B | HIS416 |
| B | NI1430 |
| site_id | BC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL A 1425 |
| Chain | Residue |
| A | GLU129 |
| A | GLN130 |
| site_id | BC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL B 1426 |
| Chain | Residue |
| B | ILE69 |
| B | HOH2076 |
| B | HOH2096 |
| site_id | BC9 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL A 1426 |
| Chain | Residue |
| B | HOH2004 |
| site_id | CC1 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL B 1427 |
| Chain | Residue |
| B | HOH2146 |
| site_id | CC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL B 1428 |
| Chain | Residue |
| B | ARG324 |
| B | TRP398 |
| B | GOL1432 |
| B | HOH2427 |
| site_id | CC3 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL B 1429 |
| Chain | Residue |
| B | HOH2195 |
| site_id | CC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE NI B 1430 |
| Chain | Residue |
| B | HIS414 |
| B | HIS416 |
| B | CL1424 |
| site_id | CC5 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE GOL A 1428 |
| Chain | Residue |
| A | ALA22 |
| A | SER101 |
| A | ASN102 |
| A | GLU103 |
| A | GLU127 |
| A | HOH2499 |
| B | ALA39 |
| B | SER40 |
| B | ASN41 |
| B | PRO403 |
| site_id | CC6 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL A 1430 |
| Chain | Residue |
| A | HOH2500 |
| A | VAL289 |
| A | TRP311 |
| A | VAL355 |
| A | LEU358 |
| A | LYS359 |
| A | GLY360 |
| A | VAL361 |
| site_id | CC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A 1431 |
| Chain | Residue |
| A | TYR332 |
| A | LYS339 |
| A | ALA376 |
| A | GLU377 |
| A | HOH2501 |
| site_id | CC8 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL B 1431 |
| Chain | Residue |
| B | ARG116 |
| site_id | CC9 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 1432 |
| Chain | Residue |
| B | ARG324 |
| B | ARG325 |
| B | ALA326 |
| B | ASN329 |
| B | MET394 |
| B | CL1428 |
| B | HOH2408 |
| site_id | DC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL B 1433 |
| Chain | Residue |
| B | LYS359 |
| B | GLY360 |
| B | HOH2428 |
Functional Information from PROSITE/UniProt
| site_id | PS00395 |
| Number of Residues | 11 |
| Details | ALANINE_RACEMASE Alanine racemase pyridoxal-phosphate attachment site. AImKADAYGHG |
| Chain | Residue | Details |
| A | ALA71-GLY81 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Active site: {"description":"Proton acceptor","evidences":[{"source":"HAMAP-Rule","id":"MF_02212","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_02212","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-(pyridoxal phosphate)lysine","evidences":[{"source":"HAMAP-Rule","id":"MF_02212","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"24419381","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4BF5","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
