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4BF5

Structure of broad spectrum racemase from Aeromonas hydrophila

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0006522biological_processalanine metabolic process
A0008784molecular_functionalanine racemase activity
A0016853molecular_functionisomerase activity
B0003824molecular_functioncatalytic activity
B0006522biological_processalanine metabolic process
B0008784molecular_functionalanine racemase activity
B0016853molecular_functionisomerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PLP A 1350
ChainResidue
ALYS74
AHOH2301
ATYR78
AHIS204
ASER245
AARG260
AGLY262
AGLY263
AHOH2173
AHOH2291

site_idAC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE PLP B 1350
ChainResidue
AHIS417
AHOH2403
AHOH2404
BLYS74
BTYR78
BVAL120
BARG173
BHIS204
BSER245
BARG260
BGLY262
BGLY263
BHOH2168
BHOH2255
BHOH2385

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B 1418
ChainResidue
ATYR24
AHOH2002
BASN33
BGLY399
BTYR400
BASN402
BLYS404
BHOH2108
BHOH2109
BHOH2426

site_idAC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B 1419
ChainResidue
AALA39
ASER40
AASN41
APRO403
AHOH2051
BALA22
BSER101
BASN102
BGLU103
BGLU127

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 1418
ChainResidue
AARG173
AASN174
AHIS204

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 1420
ChainResidue
BARG173
BASN174
BHIS204

site_idAC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 1419
ChainResidue
AARG324

site_idAC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 1421
ChainResidue
AHOH2080

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 1422
ChainResidue
AASP253

site_idBC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 1423
ChainResidue
AARG109

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 1424
ChainResidue
AGLY337
AHOH2214
AHOH2218

site_idBC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL B 1421
ChainResidue
BASP253

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 1422
ChainResidue
BLYS210
BHOH2299

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 1423
ChainResidue
AGLY49
AARG408
BSER272

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 1424
ChainResidue
BHIS414
BHIS416
BNI1430

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 1425
ChainResidue
AGLU129
AGLN130

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 1426
ChainResidue
BILE69
BHOH2076
BHOH2096

site_idBC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 1426
ChainResidue
BHOH2004

site_idCC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL B 1427
ChainResidue
BHOH2146

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 1428
ChainResidue
BARG324
BTRP398
BGOL1432
BHOH2427

site_idCC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL B 1429
ChainResidue
BHOH2195

site_idCC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NI B 1430
ChainResidue
BHIS414
BHIS416
BCL1424

site_idCC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 1428
ChainResidue
AALA22
ASER101
AASN102
AGLU103
AGLU127
AHOH2499
BALA39
BSER40
BASN41
BPRO403

site_idCC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1430
ChainResidue
AHOH2500
AVAL289
ATRP311
AVAL355
ALEU358
ALYS359
AGLY360
AVAL361

site_idCC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1431
ChainResidue
ATYR332
ALYS339
AALA376
AGLU377
AHOH2501

site_idCC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL B 1431
ChainResidue
BARG116

site_idCC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 1432
ChainResidue
BARG324
BARG325
BALA326
BASN329
BMET394
BCL1428
BHOH2408

site_idDC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 1433
ChainResidue
BLYS359
BGLY360
BHOH2428

Functional Information from PROSITE/UniProt
site_idPS00395
Number of Residues11
DetailsALANINE_RACEMASE Alanine racemase pyridoxal-phosphate attachment site. AImKADAYGHG
ChainResidueDetails
AALA71-GLY81

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_02212
ChainResidueDetails
ALYS74
ATYR300
BLYS74
BTYR300

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02212
ChainResidueDetails
AARG173
AMET348
BARG173
BMET348

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000255|HAMAP-Rule:MF_02212, ECO:0000269|PubMed:24419381, ECO:0007744|PDB:4BF5
ChainResidueDetails
ALYS74
BLYS74

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PDB entries from 2025-06-18

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