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4BEU

Structure of Vibrio cholerae broad spectrum racemase

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005829cellular_componentcytosol
A0006522biological_processalanine metabolic process
A0008784molecular_functionalanine racemase activity
A0016853molecular_functionisomerase activity
A0018111molecular_functionmethionine racemase activity
A0018113molecular_functionlysine racemase activity
A0030170molecular_functionpyridoxal phosphate binding
A0030378molecular_functionserine racemase activity
A0030632biological_processD-alanine biosynthetic process
A0042597cellular_componentperiplasmic space
A0047661molecular_functionamino-acid racemase activity
A0047679molecular_functionarginine racemase activity
A0050157molecular_functionornithine racemase activity
Functional Information from PDB Data
site_idAC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 1001
ChainResidue
AARG173
AASN174

site_idAC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE PLP A 1416
ChainResidue
AGLY262
AGLY263
AHOH2188
AHOH2300
AHOH2304
AHOH2305
AHOH2354
AHOH2397
ALYS74
ATYR78
AARG173
AHIS204
AASN244
ASER245
AARG260

Functional Information from PROSITE/UniProt
site_idPS00395
Number of Residues11
DetailsALANINE_RACEMASE Alanine racemase pyridoxal-phosphate attachment site. AImKADAYGNG
ChainResidueDetails
AALA71-GLY81

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_02212
ChainResidueDetails
ALYS74
ATYR299

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02212
ChainResidueDetails
AARG173
AMET347

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Specificity determinant that enlarges the space within the active site of Bsr compared to Alr, allowing the accomodation of a wider range of substrates => ECO:0000305|PubMed:24419381
ChainResidueDetails
APRO391

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000255|HAMAP-Rule:MF_02212, ECO:0000269|PubMed:24419381, ECO:0007744|PDB:4BEQ, ECO:0007744|PDB:4BEU
ChainResidueDetails
ALYS74

237735

PDB entries from 2025-06-18

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