4APB
Crystal structure of Mycobacterium tuberculosis fumarase (Rv1098c) S318C in complex with fumarate
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0004333 | molecular_function | fumarate hydratase activity |
| A | 0005576 | cellular_component | extracellular region |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0006099 | biological_process | tricarboxylic acid cycle |
| A | 0006106 | biological_process | fumarate metabolic process |
| A | 0009274 | cellular_component | peptidoglycan-based cell wall |
| A | 0016829 | molecular_function | lyase activity |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0004333 | molecular_function | fumarate hydratase activity |
| B | 0005576 | cellular_component | extracellular region |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0006099 | biological_process | tricarboxylic acid cycle |
| B | 0006106 | biological_process | fumarate metabolic process |
| B | 0009274 | cellular_component | peptidoglycan-based cell wall |
| B | 0016829 | molecular_function | lyase activity |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0004333 | molecular_function | fumarate hydratase activity |
| C | 0005576 | cellular_component | extracellular region |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0005886 | cellular_component | plasma membrane |
| C | 0006099 | biological_process | tricarboxylic acid cycle |
| C | 0006106 | biological_process | fumarate metabolic process |
| C | 0009274 | cellular_component | peptidoglycan-based cell wall |
| C | 0016829 | molecular_function | lyase activity |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0004333 | molecular_function | fumarate hydratase activity |
| D | 0005576 | cellular_component | extracellular region |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005829 | cellular_component | cytosol |
| D | 0005886 | cellular_component | plasma membrane |
| D | 0006099 | biological_process | tricarboxylic acid cycle |
| D | 0006106 | biological_process | fumarate metabolic process |
| D | 0009274 | cellular_component | peptidoglycan-based cell wall |
| D | 0016829 | molecular_function | lyase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE FUM A 1469 |
| Chain | Residue |
| A | CYS318 |
| C | ASN140 |
| D | THR186 |
| D | HIS187 |
| A | SER319 |
| A | ILE320 |
| A | MET321 |
| A | LYS324 |
| A | ASN326 |
| C | THR106 |
| C | SER138 |
| C | SER139 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA A 1470 |
| Chain | Residue |
| A | SER256 |
| A | HOH2296 |
| A | HOH2297 |
| A | HOH2302 |
| site_id | AC3 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE FUM B 1469 |
| Chain | Residue |
| B | CYS318 |
| B | SER319 |
| B | ILE320 |
| B | MET321 |
| B | LYS324 |
| B | ASN326 |
| C | THR186 |
| C | HIS187 |
| D | THR106 |
| D | SER138 |
| D | SER139 |
| D | ASN140 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CA B 1470 |
| Chain | Residue |
| B | GLY124 |
| B | HOH2121 |
| B | HOH2181 |
| B | HOH2182 |
| D | HOH2372 |
| site_id | AC5 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE FUM C 1469 |
| Chain | Residue |
| A | THR106 |
| A | SER138 |
| A | SER139 |
| A | ASN140 |
| B | THR186 |
| B | HIS187 |
| C | GLY317 |
| C | CYS318 |
| C | SER319 |
| C | ILE320 |
| C | MET321 |
| C | LYS324 |
| C | ASN326 |
| site_id | AC6 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE FUM D 1471 |
| Chain | Residue |
| A | THR186 |
| A | HIS187 |
| B | THR106 |
| B | SER138 |
| B | SER139 |
| B | ASN140 |
| D | CYS318 |
| D | SER319 |
| D | MET321 |
| D | LYS324 |
| D | ASN326 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE CA D 1472 |
| Chain | Residue |
| D | SER256 |
| D | HOH2253 |
| D | HOH2254 |
| D | HOH2256 |
| D | HOH2258 |
| D | HOH2382 |
| D | HOH2383 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Active site: {"description":"Proton donor/acceptor","evidences":[{"source":"HAMAP-Rule","id":"MF_00743","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"22561013","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"4ADL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4ADM","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | Active site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00743","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"22561013","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4ADM","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00743","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"22561013","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27325754","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4ADL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4ADM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4APB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5F92","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 12 |
| Details | Binding site: {"description":"in site B","evidences":[{"source":"HAMAP-Rule","id":"MF_00743","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 16 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00743","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"22561013","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27325754","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4ADL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4ADM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4APB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5F91","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5F92","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00743","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"22561013","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27325754","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4ADL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4APB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5F91","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5F92","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00743","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"22561013","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27325754","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4ADL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4APB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5F92","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 4 |
| Details | Site: {"description":"Important for catalytic activity","evidences":[{"source":"HAMAP-Rule","id":"MF_00743","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
