4AO5
B. subtilis prophage dUTPase YosS in complex with dUMP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0004170 | molecular_function | dUTP diphosphatase activity |
| A | 0006226 | biological_process | dUMP biosynthetic process |
| A | 0032991 | cellular_component | protein-containing complex |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0046081 | biological_process | dUTP catabolic process |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0004170 | molecular_function | dUTP diphosphatase activity |
| B | 0006226 | biological_process | dUMP biosynthetic process |
| B | 0032991 | cellular_component | protein-containing complex |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0046081 | biological_process | dUTP catabolic process |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0004170 | molecular_function | dUTP diphosphatase activity |
| C | 0006226 | biological_process | dUMP biosynthetic process |
| C | 0032991 | cellular_component | protein-containing complex |
| C | 0042802 | molecular_function | identical protein binding |
| C | 0046081 | biological_process | dUTP catabolic process |
| D | 0000287 | molecular_function | magnesium ion binding |
| D | 0004170 | molecular_function | dUTP diphosphatase activity |
| D | 0006226 | biological_process | dUMP biosynthetic process |
| D | 0032991 | cellular_component | protein-containing complex |
| D | 0042802 | molecular_function | identical protein binding |
| D | 0046081 | biological_process | dUTP catabolic process |
| E | 0000287 | molecular_function | magnesium ion binding |
| E | 0004170 | molecular_function | dUTP diphosphatase activity |
| E | 0006226 | biological_process | dUMP biosynthetic process |
| E | 0032991 | cellular_component | protein-containing complex |
| E | 0042802 | molecular_function | identical protein binding |
| E | 0046081 | biological_process | dUTP catabolic process |
| F | 0000287 | molecular_function | magnesium ion binding |
| F | 0004170 | molecular_function | dUTP diphosphatase activity |
| F | 0006226 | biological_process | dUMP biosynthetic process |
| F | 0032991 | cellular_component | protein-containing complex |
| F | 0042802 | molecular_function | identical protein binding |
| F | 0046081 | biological_process | dUTP catabolic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE UMP A 1129 |
| Chain | Residue |
| A | ASN74 |
| A | HOH2207 |
| A | HOH2208 |
| A | HOH2210 |
| C | SER62 |
| D | LYS103 |
| A | GLY77 |
| A | ILE79 |
| A | TYR83 |
| A | TRP90 |
| A | PHE91 |
| A | PRO93 |
| A | HOH2145 |
| A | HOH2206 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA A 1130 |
| Chain | Residue |
| A | ASN16 |
| A | ILE24 |
| A | ASP25 |
| A | ARG27 |
| A | HOH2042 |
| site_id | AC3 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE UMP B 1129 |
| Chain | Residue |
| A | SER62 |
| A | HOH2120 |
| A | HOH2127 |
| A | HOH2128 |
| B | ASN74 |
| B | GLY77 |
| B | ILE79 |
| B | TYR83 |
| B | TRP90 |
| B | PHE91 |
| B | PRO93 |
| B | HOH2150 |
| B | HOH2205 |
| B | HOH2206 |
| B | HOH2207 |
| E | LYS101 |
| E | LYS103 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE NA B 1130 |
| Chain | Residue |
| B | THR13 |
| B | GLY105 |
| F | ARG107 |
| site_id | AC5 |
| Number of Residues | 16 |
| Details | BINDING SITE FOR RESIDUE UMP C 1129 |
| Chain | Residue |
| B | SER62 |
| B | SER63 |
| B | HOH2129 |
| B | HOH2135 |
| B | HOH2137 |
| C | ASN74 |
| C | GLY77 |
| C | TYR83 |
| C | TRP90 |
| C | PHE91 |
| C | PRO93 |
| C | HOH2154 |
| C | HOH2155 |
| C | HOH2156 |
| C | HOH2157 |
| C | HOH2158 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE NA C 1130 |
| Chain | Residue |
| C | ARG107 |
| D | THR13 |
| D | GLY105 |
| site_id | AC7 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE UMP D 1129 |
| Chain | Residue |
| B | LYS103 |
| B | HOH2180 |
| D | ASN74 |
| D | GLY77 |
| D | ILE79 |
| D | TYR83 |
| D | TRP90 |
| D | PHE91 |
| D | PRO93 |
| D | HOH2159 |
| D | HOH2220 |
| D | HOH2221 |
| D | HOH2222 |
| D | HOH2223 |
| D | HOH2224 |
| D | HOH2226 |
| F | SER62 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA D 1130 |
| Chain | Residue |
| D | ARG14 |
| D | ILE15 |
| D | ASN16 |
| D | ARG27 |
| D | HOH2042 |
| site_id | AC9 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE UMP E 1129 |
| Chain | Residue |
| D | SER62 |
| D | SER63 |
| D | HOH2133 |
| D | HOH2139 |
| D | HOH2142 |
| E | ASN74 |
| E | GLY77 |
| E | ILE79 |
| E | TYR83 |
| E | TRP90 |
| E | PHE91 |
| E | PRO93 |
| E | HOH2184 |
| E | HOH2185 |
| E | HOH2186 |
| E | HOH2187 |
| E | HOH2188 |
| site_id | BC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE NA E 1130 |
| Chain | Residue |
| E | GLY105 |
| A | ARG107 |
| E | THR13 |
| site_id | BC2 |
| Number of Residues | 16 |
| Details | BINDING SITE FOR RESIDUE UMP F 1129 |
| Chain | Residue |
| E | SER62 |
| E | HOH2112 |
| E | HOH2116 |
| E | HOH2121 |
| F | ASN74 |
| F | GLY77 |
| F | ILE79 |
| F | TYR83 |
| F | TRP90 |
| F | PHE91 |
| F | PRO93 |
| F | HOH2148 |
| F | HOH2149 |
| F | HOH2150 |
| F | HOH2151 |
| F | HOH2153 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | Active site: {"description":"Proton acceptor","evidences":[{"source":"PubMed","id":"21358047","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"23897460","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 24 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"23897460","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4AO5","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
