4A8M
Non-Catalytic Ions Direct the RNA-Dependent RNA Polymerase of Bacterial dsRNA virus phi6 from De Novo Initiation to Elongation
Functional Information from GO Data
Chain | GOid | namespace | contents |
P | 0000166 | molecular_function | nucleotide binding |
P | 0001172 | biological_process | RNA-templated transcription |
P | 0003723 | molecular_function | RNA binding |
P | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
P | 0006351 | biological_process | DNA-templated transcription |
P | 0019079 | biological_process | viral genome replication |
P | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
P | 0039694 | biological_process | viral RNA genome replication |
P | 0044423 | cellular_component | virion component |
P | 0046872 | molecular_function | metal ion binding |
P | 0050265 | molecular_function | RNA uridylyltransferase activity |
Q | 0000166 | molecular_function | nucleotide binding |
Q | 0001172 | biological_process | RNA-templated transcription |
Q | 0003723 | molecular_function | RNA binding |
Q | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
Q | 0006351 | biological_process | DNA-templated transcription |
Q | 0019079 | biological_process | viral genome replication |
Q | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
Q | 0039694 | biological_process | viral RNA genome replication |
Q | 0044423 | cellular_component | virion component |
Q | 0046872 | molecular_function | metal ion binding |
Q | 0050265 | molecular_function | RNA uridylyltransferase activity |
R | 0000166 | molecular_function | nucleotide binding |
R | 0001172 | biological_process | RNA-templated transcription |
R | 0003723 | molecular_function | RNA binding |
R | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
R | 0006351 | biological_process | DNA-templated transcription |
R | 0019079 | biological_process | viral genome replication |
R | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
R | 0039694 | biological_process | viral RNA genome replication |
R | 0044423 | cellular_component | virion component |
R | 0046872 | molecular_function | metal ion binding |
R | 0050265 | molecular_function | RNA uridylyltransferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE GTP R 1665 |
Chain | Residue |
R | ARG81 |
R | GLU529 |
R | ASN626 |
R | TYR630 |
R | MG1666 |
R | ATP1667 |
R | ARG204 |
R | GLN206 |
R | ARG270 |
R | ASP454 |
R | GLU491 |
R | ALA495 |
R | LEU497 |
R | GLY498 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG R 1666 |
Chain | Residue |
R | ASP454 |
R | GLU491 |
R | ALA495 |
R | GTP1665 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG P 1665 |
Chain | Residue |
P | ASP454 |
P | GLU491 |
P | ALA495 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG Q 1665 |
Chain | Residue |
Q | ASP454 |
Q | GLU491 |
Q | ALA495 |
Q | GTP1666 |
site_id | AC5 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GTP P 1666 |
Chain | Residue |
P | ARG81 |
P | ARG204 |
P | ARG270 |
P | ASP454 |
P | GLU491 |
P | ALA495 |
P | PHE496 |
P | LEU497 |
P | GLY498 |
P | ATP1667 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ATP P 1667 |
Chain | Residue |
P | LYS223 |
P | ARG225 |
P | ARG270 |
P | GTP1666 |
site_id | AC7 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE GTP Q 1666 |
Chain | Residue |
Q | ARG81 |
Q | ARG270 |
Q | ASP454 |
Q | GLU491 |
Q | ALA495 |
Q | LEU497 |
Q | GLY498 |
Q | SER520 |
Q | GLU529 |
Q | ASN626 |
Q | TYR630 |
Q | MG1665 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ATP Q 1667 |
Chain | Residue |
Q | ARG225 |
Q | ARG268 |
Q | ARG270 |
Q | VAL325 |
Q | ASP327 |
Q | HIS328 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ATP R 1667 |
Chain | Residue |
R | ARG225 |
R | ARG268 |
R | ARG270 |
R | ASP327 |
R | GTP1665 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 9 |
Details | BINDING: |
Chain | Residue | Details |
P | ASP453 | |
P | TYR490 | |
P | GLY494 | |
Q | ASP453 | |
Q | TYR490 | |
Q | GLY494 | |
R | ASP453 | |
R | TYR490 | |
R | GLY494 |