4A8F
Non-Catalytic Ions Direct the RNA-Dependent RNA Polymerase of Bacterial dsRNA virus phi6 from De Novo Initiation to Elongation
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0001172 | biological_process | RNA-templated transcription |
| A | 0003723 | molecular_function | RNA binding |
| A | 0003968 | molecular_function | RNA-directed RNA polymerase activity |
| A | 0006351 | biological_process | DNA-templated transcription |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016779 | molecular_function | nucleotidyltransferase activity |
| A | 0019079 | biological_process | viral genome replication |
| A | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
| A | 0039694 | biological_process | viral RNA genome replication |
| A | 0044423 | cellular_component | virion component |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0050265 | molecular_function | RNA uridylyltransferase activity |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0001172 | biological_process | RNA-templated transcription |
| B | 0003723 | molecular_function | RNA binding |
| B | 0003968 | molecular_function | RNA-directed RNA polymerase activity |
| B | 0006351 | biological_process | DNA-templated transcription |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016779 | molecular_function | nucleotidyltransferase activity |
| B | 0019079 | biological_process | viral genome replication |
| B | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
| B | 0039694 | biological_process | viral RNA genome replication |
| B | 0044423 | cellular_component | virion component |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0050265 | molecular_function | RNA uridylyltransferase activity |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0001172 | biological_process | RNA-templated transcription |
| C | 0003723 | molecular_function | RNA binding |
| C | 0003968 | molecular_function | RNA-directed RNA polymerase activity |
| C | 0006351 | biological_process | DNA-templated transcription |
| C | 0016740 | molecular_function | transferase activity |
| C | 0016779 | molecular_function | nucleotidyltransferase activity |
| C | 0019079 | biological_process | viral genome replication |
| C | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
| C | 0039694 | biological_process | viral RNA genome replication |
| C | 0044423 | cellular_component | virion component |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0050265 | molecular_function | RNA uridylyltransferase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE MG A 1665 |
| Chain | Residue |
| A | THR323 |
| A | ASP454 |
| A | ALA455 |
| A | GLU491 |
| A | ALA495 |
| A | GLY498 |
| A | ATP1666 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE ATP A 1666 |
| Chain | Residue |
| A | SER520 |
| A | ASN524 |
| A | TYR630 |
| A | MG1665 |
| A | ATP1667 |
| A | ARG270 |
| A | GLY498 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ATP A 1667 |
| Chain | Residue |
| A | ARG225 |
| A | ARG268 |
| A | ARG270 |
| A | ASP327 |
| A | ATP1666 |
| site_id | AC4 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE ATP B 1665 |
| Chain | Residue |
| B | ARG81 |
| B | ASP454 |
| B | GLU491 |
| B | ALA495 |
| B | LEU497 |
| B | GLY498 |
| B | SER520 |
| B | ASN524 |
| B | TYR630 |
| B | ATP1666 |
| site_id | AC5 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE ATP B 1666 |
| Chain | Residue |
| B | LYS223 |
| B | ARG225 |
| B | ARG268 |
| B | ARG270 |
| B | SER326 |
| B | ASP327 |
| B | HIS328 |
| B | ASP329 |
| B | SER452 |
| B | ASP453 |
| B | ATP1665 |
| B | MG1667 |
| site_id | AC6 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE MG B 1667 |
| Chain | Residue |
| B | ATP1666 |
| site_id | AC7 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE ATP C 1665 |
| Chain | Residue |
| C | ARG225 |
| C | ARG268 |
| C | ARG270 |
| C | ASP327 |
| C | HIS328 |
| C | ASP329 |
| C | SER452 |
| C | ASP453 |
| C | ATP1666 |
| site_id | AC8 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE ATP C 1666 |
| Chain | Residue |
| C | ARG270 |
| C | ASP453 |
| C | GLY498 |
| C | SER520 |
| C | TYR630 |
| C | ATP1665 |
| C | MG1667 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG C 1667 |
| Chain | Residue |
| C | ASP454 |
| C | GLU491 |
| C | ALA495 |
| C | ATP1666 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 525 |
| Details | Domain: {"description":"RdRp catalytic","evidences":[{"source":"PROSITE-ProRule","id":"PRU00539","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 9 |
| Details | Binding site: {} |
| Chain | Residue | Details |
