4A1I
ykud from B.subtilis
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0008360 | biological_process | regulation of cell shape |
| A | 0009252 | biological_process | peptidoglycan biosynthetic process |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016757 | molecular_function | glycosyltransferase activity |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0018104 | biological_process | peptidoglycan-protein cross-linking |
| A | 0030435 | biological_process | sporulation resulting in formation of a cellular spore |
| A | 0031160 | cellular_component | spore wall |
| A | 0071555 | biological_process | cell wall organization |
| A | 0071972 | molecular_function | peptidoglycan L,D-transpeptidase activity |
| B | 0008360 | biological_process | regulation of cell shape |
| B | 0009252 | biological_process | peptidoglycan biosynthetic process |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016757 | molecular_function | glycosyltransferase activity |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0018104 | biological_process | peptidoglycan-protein cross-linking |
| B | 0030435 | biological_process | sporulation resulting in formation of a cellular spore |
| B | 0031160 | cellular_component | spore wall |
| B | 0071555 | biological_process | cell wall organization |
| B | 0071972 | molecular_function | peptidoglycan L,D-transpeptidase activity |
| C | 0008360 | biological_process | regulation of cell shape |
| C | 0009252 | biological_process | peptidoglycan biosynthetic process |
| C | 0016740 | molecular_function | transferase activity |
| C | 0016757 | molecular_function | glycosyltransferase activity |
| C | 0016787 | molecular_function | hydrolase activity |
| C | 0018104 | biological_process | peptidoglycan-protein cross-linking |
| C | 0030435 | biological_process | sporulation resulting in formation of a cellular spore |
| C | 0031160 | cellular_component | spore wall |
| C | 0071555 | biological_process | cell wall organization |
| C | 0071972 | molecular_function | peptidoglycan L,D-transpeptidase activity |
| D | 0008360 | biological_process | regulation of cell shape |
| D | 0009252 | biological_process | peptidoglycan biosynthetic process |
| D | 0016740 | molecular_function | transferase activity |
| D | 0016757 | molecular_function | glycosyltransferase activity |
| D | 0016787 | molecular_function | hydrolase activity |
| D | 0018104 | biological_process | peptidoglycan-protein cross-linking |
| D | 0030435 | biological_process | sporulation resulting in formation of a cellular spore |
| D | 0031160 | cellular_component | spore wall |
| D | 0071555 | biological_process | cell wall organization |
| D | 0071972 | molecular_function | peptidoglycan L,D-transpeptidase activity |
| E | 0008360 | biological_process | regulation of cell shape |
| E | 0009252 | biological_process | peptidoglycan biosynthetic process |
| E | 0016740 | molecular_function | transferase activity |
| E | 0016757 | molecular_function | glycosyltransferase activity |
| E | 0016787 | molecular_function | hydrolase activity |
| E | 0018104 | biological_process | peptidoglycan-protein cross-linking |
| E | 0030435 | biological_process | sporulation resulting in formation of a cellular spore |
| E | 0031160 | cellular_component | spore wall |
| E | 0071555 | biological_process | cell wall organization |
| E | 0071972 | molecular_function | peptidoglycan L,D-transpeptidase activity |
| F | 0008360 | biological_process | regulation of cell shape |
| F | 0009252 | biological_process | peptidoglycan biosynthetic process |
| F | 0016740 | molecular_function | transferase activity |
| F | 0016757 | molecular_function | glycosyltransferase activity |
| F | 0016787 | molecular_function | hydrolase activity |
| F | 0018104 | biological_process | peptidoglycan-protein cross-linking |
| F | 0030435 | biological_process | sporulation resulting in formation of a cellular spore |
| F | 0031160 | cellular_component | spore wall |
| F | 0071555 | biological_process | cell wall organization |
| F | 0071972 | molecular_function | peptidoglycan L,D-transpeptidase activity |
| G | 0008360 | biological_process | regulation of cell shape |
| G | 0009252 | biological_process | peptidoglycan biosynthetic process |
| G | 0016740 | molecular_function | transferase activity |
| G | 0016757 | molecular_function | glycosyltransferase activity |
| G | 0016787 | molecular_function | hydrolase activity |
| G | 0018104 | biological_process | peptidoglycan-protein cross-linking |
| G | 0030435 | biological_process | sporulation resulting in formation of a cellular spore |
| G | 0031160 | cellular_component | spore wall |
| G | 0071555 | biological_process | cell wall organization |
| G | 0071972 | molecular_function | peptidoglycan L,D-transpeptidase activity |
| H | 0008360 | biological_process | regulation of cell shape |
| H | 0009252 | biological_process | peptidoglycan biosynthetic process |
| H | 0016740 | molecular_function | transferase activity |
| H | 0016757 | molecular_function | glycosyltransferase activity |
| H | 0016787 | molecular_function | hydrolase activity |
| H | 0018104 | biological_process | peptidoglycan-protein cross-linking |
| H | 0030435 | biological_process | sporulation resulting in formation of a cellular spore |
| H | 0031160 | cellular_component | spore wall |
| H | 0071555 | biological_process | cell wall organization |
| H | 0071972 | molecular_function | peptidoglycan L,D-transpeptidase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE SO4 A 1165 |
| Chain | Residue |
| A | HIS123 |
| H | HIS119 |
| A | SER136 |
| A | LYS137 |
| A | GLY138 |
| A | CYS139 |
| A | ARG141 |
| A | CD1169 |
| A | CL1170 |
| A | HOH2184 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE SO4 A 1166 |
| Chain | Residue |
| A | THR92 |
| A | ARG164 |
| A | HOH2157 |
| A | HOH2220 |
| A | HOH2221 |
| A | HOH2222 |
| A | HOH2223 |
| D | LEU12 |
| H | ASN13 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 A 1167 |
| Chain | Residue |
| A | ASN127 |
| A | VAL135 |
| A | ARG141 |
| A | HOH2190 |
| A | HOH2202 |
| site_id | AC4 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE SO4 A 1168 |
| Chain | Residue |
| A | LEU12 |
| A | HOH2048 |
| A | HOH2049 |
| A | HOH2051 |
| A | HOH2224 |
| A | HOH2225 |
| D | THR92 |
| D | ARG164 |
| E | HOH2032 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD A 1169 |
| Chain | Residue |
| A | CYS139 |
| A | SO41165 |
| A | CL1170 |
| A | HOH2184 |
| H | HIS119 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CL A 1170 |
| Chain | Residue |
| A | PHE108 |
| A | HIS119 |
| A | SO41165 |
| A | CD1169 |
| A | HOH2184 |
| H | HIS119 |
| site_id | AC7 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE SO4 B 1165 |
| Chain | Residue |
| B | HIS123 |
| B | SER136 |
| B | LYS137 |
| B | GLY138 |
| B | CYS139 |
| B | ARG141 |
| B | CD1167 |
| B | CL1168 |
| B | HOH2170 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 B 1166 |
| Chain | Residue |
| B | THR92 |
| B | ARG164 |
| B | HOH2202 |
| B | HOH2203 |
| B | HOH2204 |
| B | HOH2205 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD B 1167 |
| Chain | Residue |
| B | CYS139 |
| B | SO41165 |
| B | CL1168 |
| B | HOH2170 |
| site_id | BC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CL B 1168 |
| Chain | Residue |
| B | PHE108 |
| B | HIS119 |
| B | SO41165 |
| B | CD1167 |
| B | HOH2170 |
| site_id | BC2 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE SO4 C 1165 |
| Chain | Residue |
| C | HIS123 |
| C | SER136 |
| C | LYS137 |
| C | GLY138 |
| C | CYS139 |
| C | ARG141 |
| C | CD1168 |
| C | CL1169 |
| C | HOH2173 |
| C | HOH2200 |
| F | HIS119 |
| site_id | BC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 C 1166 |
| Chain | Residue |
| C | THR92 |
| C | ARG164 |
| C | HOH2149 |
| C | HOH2199 |
| C | HOH2201 |
| C | HOH2202 |
| C | HOH2203 |
| site_id | BC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 C 1167 |
| Chain | Residue |
| C | ASN127 |
| C | VAL135 |
| C | ARG141 |
| C | HOH2184 |
| C | HOH2187 |
| site_id | BC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD C 1168 |
| Chain | Residue |
| C | CYS139 |
| C | SO41165 |
| C | CL1169 |
| C | HOH2173 |
| F | HIS119 |
| site_id | BC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE CL C 1169 |
| Chain | Residue |
| C | CD1168 |
| C | HOH2173 |
| F | HIS119 |
| F | HOH2128 |
| C | PHE108 |
| C | HIS119 |
| C | SO41165 |
| site_id | BC7 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE SO4 D 1165 |
| Chain | Residue |
| D | HIS123 |
| D | SER136 |
| D | LYS137 |
| D | GLY138 |
| D | CYS139 |
| D | ARG141 |
| D | CD1166 |
| D | CL1167 |
| D | HOH2175 |
| D | HOH2211 |
| E | HIS119 |
| site_id | BC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD D 1166 |
| Chain | Residue |
| D | CYS139 |
| D | SO41165 |
| D | CL1167 |
| D | HOH2175 |
| E | HIS119 |
| site_id | BC9 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE CL D 1167 |
| Chain | Residue |
| D | PHE108 |
| D | TRP112 |
| D | HIS119 |
| D | SO41165 |
| D | CD1166 |
| D | HOH2175 |
| E | HIS119 |
| site_id | CC1 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE SO4 E 1165 |
| Chain | Residue |
| D | HIS119 |
| E | HIS123 |
| E | SER136 |
| E | LYS137 |
| E | GLY138 |
| E | CYS139 |
| E | ARG141 |
| E | CD1168 |
| E | CL1169 |
| E | HOH2144 |
| E | HOH2169 |
| site_id | CC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 E 1166 |
| Chain | Residue |
| A | ASN73 |
| A | ARG159 |
| A | HOH2121 |
| E | GLU94 |
| E | TYR96 |
| E | ARG159 |
| E | HOH2006 |
| site_id | CC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 E 1167 |
| Chain | Residue |
| E | ASN127 |
| E | ARG141 |
| E | HOH2147 |
| site_id | CC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD E 1168 |
| Chain | Residue |
| D | HIS119 |
| E | CYS139 |
| E | SO41165 |
| E | CL1169 |
| E | HOH2144 |
| site_id | CC5 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE CL E 1169 |
| Chain | Residue |
| D | HIS119 |
| E | PHE108 |
| E | TRP112 |
| E | HIS119 |
| E | SO41165 |
| E | CD1168 |
| E | HOH2115 |
| E | HOH2144 |
| site_id | CC6 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE SO4 F 1165 |
| Chain | Residue |
| C | HIS119 |
| F | HIS123 |
| F | SER136 |
| F | LYS137 |
| F | GLY138 |
| F | CYS139 |
| F | ARG141 |
| F | CD1168 |
| F | CL1169 |
| F | HOH2162 |
| F | HOH2192 |
| site_id | CC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 F 1166 |
| Chain | Residue |
| F | TYR96 |
| F | ARG159 |
| F | HOH2005 |
| F | HOH2101 |
| F | HOH2194 |
| site_id | CC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 F 1167 |
| Chain | Residue |
| F | ASN127 |
| F | ARG141 |
| F | HOH2163 |
| F | HOH2173 |
| site_id | CC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD F 1168 |
| Chain | Residue |
| C | HIS119 |
| F | CYS139 |
| F | SO41165 |
| F | CL1169 |
| F | HOH2162 |
| site_id | DC1 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE CL F 1169 |
| Chain | Residue |
| C | HIS119 |
| F | PHE108 |
| F | TRP112 |
| F | HIS119 |
| F | SO41165 |
| F | CD1168 |
| F | HOH2128 |
| F | HOH2162 |
| site_id | DC2 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE SO4 G 1165 |
| Chain | Residue |
| G | HIS123 |
| G | SER136 |
| G | LYS137 |
| G | GLY138 |
| G | CYS139 |
| G | ARG141 |
| G | CD1168 |
| G | CL1169 |
| G | HOH2133 |
| G | HOH2160 |
| G | HOH2161 |
| site_id | DC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 G 1166 |
| Chain | Residue |
| C | ARG159 |
| G | TYR96 |
| G | ARG159 |
| G | HOH2005 |
| site_id | DC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 G 1167 |
| Chain | Residue |
| G | ASN127 |
| G | ARG141 |
| G | HOH2136 |
| site_id | DC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD G 1168 |
| Chain | Residue |
| G | CYS139 |
| G | SO41165 |
| G | CL1169 |
| G | HOH2133 |
| site_id | DC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE CL G 1169 |
| Chain | Residue |
| G | PHE108 |
| G | TRP112 |
| G | HIS119 |
| G | SO41165 |
| G | CD1168 |
| G | HOH2102 |
| G | HOH2133 |
| site_id | DC7 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE SO4 H 1165 |
| Chain | Residue |
| A | HIS119 |
| H | HIS123 |
| H | SER136 |
| H | LYS137 |
| H | GLY138 |
| H | CYS139 |
| H | ARG141 |
| H | CD1168 |
| H | CL1169 |
| H | HOH2136 |
| H | HOH2166 |
| site_id | DC8 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE SO4 H 1166 |
| Chain | Residue |
| D | ASN73 |
| D | ARG159 |
| D | HOH2114 |
| H | TYR96 |
| H | ARG159 |
| H | HOH2004 |
| H | HOH2112 |
| H | HOH2167 |
| site_id | DC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 H 1167 |
| Chain | Residue |
| H | ASN127 |
| H | ARG141 |
| H | HOH2139 |
| H | HOH2168 |
| site_id | EC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD H 1168 |
| Chain | Residue |
| A | HIS119 |
| H | CYS139 |
| H | SO41165 |
| H | CL1169 |
| H | HOH2136 |
| site_id | EC2 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE CL H 1169 |
| Chain | Residue |
| A | HIS119 |
| A | LYS137 |
| H | PHE108 |
| H | TRP112 |
| H | HIS119 |
| H | SO41165 |
| H | CD1168 |
| H | HOH2136 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 8 |
| Details | ACT_SITE: Proton donor/acceptor => ECO:0000255|PROSITE-ProRule:PRU01373 |
| Chain | Residue | Details |
| A | HIS123 | |
| B | HIS123 | |
| C | HIS123 | |
| D | HIS123 | |
| E | HIS123 | |
| F | HIS123 | |
| G | HIS123 | |
| H | HIS123 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 8 |
| Details | ACT_SITE: Nucleophile => ECO:0000255|PROSITE-ProRule:PRU01373 |
| Chain | Residue | Details |
| A | CYS139 | |
| B | CYS139 | |
| C | CYS139 | |
| D | CYS139 | |
| E | CYS139 | |
| F | CYS139 | |
| G | CYS139 | |
| H | CYS139 |
