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4A01

Crystal Structure of the H-Translocating Pyrophosphatase

Functional Information from GO Data
ChainGOidnamespacecontents
A0004427molecular_functioninorganic diphosphate phosphatase activity
A0005773cellular_componentvacuole
A0005774cellular_componentvacuolar membrane
A0009678molecular_functiondiphosphate hydrolysis-driven proton transmembrane transporter activity
A0016020cellular_componentmembrane
A0046872molecular_functionmetal ion binding
A1902600biological_processproton transmembrane transport
B0004427molecular_functioninorganic diphosphate phosphatase activity
B0005773cellular_componentvacuole
B0005774cellular_componentvacuolar membrane
B0009678molecular_functiondiphosphate hydrolysis-driven proton transmembrane transporter activity
B0016020cellular_componentmembrane
B0046872molecular_functionmetal ion binding
B1902600biological_processproton transmembrane transport
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 1767
ChainResidue
AASP253
AASP257
AMG1769
A2PN1773
AHOH2108
AHOH2109
AHOH2112

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 1768
ChainResidue
A2PN1773
AHOH2127
AHOH2128
AHOH2129
AHOH2134
AASP507
AMG1770

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 1769
ChainResidue
AASP253
AASP727
ALYS730
AMG1767
A2PN1773
AHOH2109
AHOH2299

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1770
ChainResidue
AASP283
AASP507
AMG1768
A2PN1773
AHOH2106
AHOH2134

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1771
ChainResidue
AASN534
AASP691
A2PN1773
AHOH2216
AHOH2234

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 1772
ChainResidue
AASN534
A2PN1773
AHOH2137
AHOH2214
AHOH2236

site_idAC7
Number of Residues29
DetailsBINDING SITE FOR RESIDUE 2PN A 1773
ChainResidue
ALYS250
AASP253
AGLU268
AASP283
AASP287
AASP507
AASN534
AASP691
ALYS694
AASP727
ALYS730
AASP731
AMG1767
AMG1768
AMG1769
AMG1770
AMG1771
AK1772
AHOH2105
AHOH2106
AHOH2109
AHOH2112
AHOH2128
AHOH2134
AHOH2137
AHOH2216
AHOH2234
AHOH2236
AHOH2299

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 1767
ChainResidue
BASP253
BASP257
BMG1769
B2PN1773
BHOH2072
BHOH2073
BHOH2075

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 1768
ChainResidue
BASP507
BMG1770
B2PN1773
BHOH2087
BHOH2088
BHOH2089
BHOH2094

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 1769
ChainResidue
BASP253
BASP727
BLYS730
BMG1767
B2PN1773
BHOH2072
BHOH2232

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1770
ChainResidue
BASP283
BASP507
BMG1768
B2PN1773
BHOH2070
BHOH2094

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1771
ChainResidue
BASN534
BASP691
BK1772
B2PN1773
BHOH2169
BHOH2179

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE K B 1772
ChainResidue
BASN534
BMG1771
B2PN1773
BHOH2098
BHOH2167
BHOH2169
BHOH2181

site_idBC5
Number of Residues29
DetailsBINDING SITE FOR RESIDUE 2PN B 1773
ChainResidue
BLYS250
BASP253
BASP283
BASP287
BASP507
BASN534
BASP691
BLYS694
BASP727
BLYS730
BASP731
BMG1767
BMG1768
BMG1769
BMG1770
BMG1771
BK1772
BHOH2069
BHOH2070
BHOH2072
BHOH2075
BHOH2087
BHOH2088
BHOH2094
BHOH2098
BHOH2169
BHOH2179
BHOH2181
BHOH2232

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE DMU A 1774
ChainResidue
ALYS362
ATYR424
ATYR430
AALA465
AHOH2164
AHOH2324
AHOH2325

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE DMU B 1774
ChainResidue
ALYS457
BTRP588
BLYS640
BGLU641
BTHR652

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE DMU A 1775
ChainResidue
ATRP588
AMET592
ATHR652
BLYS457
BDMU1777

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE DMU A 1776
ChainResidue
ATYR95
APHE99
AASP636
AHOH2040
AHOH2326

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE DMU B 1775
ChainResidue
BSER401
BTRP402
BHOH2140

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE DMU B 1776
ChainResidue
AGLN403
BPHE660
BPHE763
BHOH2255

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DMU A 1777
ChainResidue
AILE577
APHE660
ALEU762
AHOH2328
AHOH2329
BDMU1777

site_idCC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE DMU A 1778
ChainResidue
AGLY116
AHIS758
AHOH2331
AHOH2332
AHOH2333
AHOH2334
AHOH2335

site_idCC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE DMU B 1777
ChainResidue
ATRP588
ADMU1775
ADMU1777
BTYR424
BTYR425
BLYS457
BILE461
BHOH2256

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues148
DetailsTOPO_DOM: Intravacuolar => ECO:0000305|PubMed:22456709
ChainResidueDetails
AGLY2-ASP8
BGLY2-ASP8
BGLU115-ALA135
BGLY217-ASP219
BSER313-GLU320
BALA383-SER401
BSER473-ALA478
BSER564-PRO573
BGLY661
BGLY759-ILE765
AGLU115-ALA135
AGLY217-ASP219
ASER313-GLU320
AALA383-SER401
ASER473-ALA478
ASER564-PRO573
AGLY661
AGLY759-ILE765

site_idSWS_FT_FI2
Number of Residues850
DetailsTRANSMEM: Helical
ChainResidueDetails
ALEU9-LYS35
AVAL448-VAL472
AMET479-ILE505
ATHR535-ALA563
ALYS574-LEU602
ALYS632-PHE660
AVAL662-ALA689
ASER733-HIS758
BLEU9-LYS35
BALA85-VAL114
BLEU136-ILE163
AALA85-VAL114
BPHE187-TYR216
BTRP220-TYR248
BASP287-ILE312
BLEU321-THR346
BLYS355-VAL382
BTRP402-TYR425
BVAL448-VAL472
BMET479-ILE505
BTHR535-ALA563
BLYS574-LEU602
ALEU136-ILE163
BLYS632-PHE660
BVAL662-ALA689
BSER733-HIS758
APHE187-TYR216
ATRP220-TYR248
AASP287-ILE312
ALEU321-THR346
ALYS355-VAL382
ATRP402-TYR425

site_idSWS_FT_FI3
Number of Residues466
DetailsTOPO_DOM: Cytoplasmic => ECO:0000305|PubMed:22456709
ChainResidueDetails
AVAL36-GLY84
BALA164-ALA186
BTHR249-GLY286
BASP347-VAL354
BTHR426-ASN447
BSER506-ASN534
BLYS603-VAL631
BTRP690-THR732
AALA164-ALA186
ATHR249-GLY286
AASP347-VAL354
ATHR426-ASN447
ASER506-ASN534
ALYS603-VAL631
ATRP690-THR732
BVAL36-GLY84

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING:
ChainResidueDetails
ALYS250
ALYS730
BLYS250
BLYS730

site_idSWS_FT_FI5
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:22456709
ChainResidueDetails
AASP253
BASP283
BASP507
BASN534
BASP691
BASP727
AASP257
AASP283
AASP507
AASN534
AASP691
AASP727
BASP253
BASP257

site_idSWS_FT_FI6
Number of Residues12
DetailsSITE: Important for proton transport => ECO:0000305
ChainResidueDetails
AARG242
BGLU301
BASP731
BLYS742
AASP287
AASP294
AGLU301
AASP731
ALYS742
BARG242
BASP287
BASP294

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PDB entries from 2024-10-16

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