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3ZVL

The structural basis for substrate recognition by mammalian polynucleotide kinase 3' phosphatase

Functional Information from GO Data
ChainGOidnamespacecontents
A0006281biological_processDNA repair
A0046403molecular_functionpolynucleotide 3'-phosphatase activity
A0046404molecular_functionATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1523
ChainResidue
AARG179
ASER189
ATRP191
AARG192
ALYS241
AHOH2064

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1524
ChainResidue
AHOH2033
AHOH2034
AHOH2036
AASP170
AASP172
AASP288

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 1525
ChainResidue
AASP170
AASN217
ALYS259
AHOH2205

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 1526
ChainResidue
AASN217
AGLN218
AMET219
AARG258

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 1527
ChainResidue
APRO319
APHE320
AGOL1536
AHOH2209

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 1528
ChainResidue
AASN363
AHOH2363
AHOH2369

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT A 1529
ChainResidue
APRO185
ASER187
APRO188
ALYS234
AHOH2040

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT A 1530
ChainResidue
AALA375
APRO501
APHE502
AARG503

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE ACT A 1531
ChainResidue
APHE372
APRO373
AGLY374
AALA375
AGLY376
ALYS377
ASER378
AHOH2374
AHOH2376

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 1532
ChainResidue
ALYS201
ATYR210
APHE326
AGOL1536

site_idBC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 1533
ChainResidue
AGLY159
AVAL160
ALYS161
AGLN163
ATYR210
ALYS211
ALEU212
AHOH2096
AHOH2112
AHOH2182

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1534
ChainResidue
APRO338
AHIS458
AARG461
APHE519
ASER520
AGLU521
AHOH2335

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1535
ChainResidue
AASP172
AILE176
ATHR177
APRO185
AASP190
ATRP191
ALYS234
AHOH2042

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1536
ChainResidue
APHE320
ACL1527
AGOL1532
AHOH2506
AHOH2507

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 1537
ChainResidue
ALYS182
AHOH2390

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255
ChainResidueDetails
AGLY371

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q96T60
ChainResidueDetails
ASER114

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:17525332
ChainResidueDetails
ATHR122

224931

PDB entries from 2024-09-11

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