Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3ZTR

Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FIRST STAGE OF RADIATION DAMAGE)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004550molecular_functionnucleoside diphosphate kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006163biological_processpurine nucleotide metabolic process
A0006183biological_processGTP biosynthetic process
A0006220biological_processpyrimidine nucleotide metabolic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
A0009117biological_processnucleotide metabolic process
A0016301molecular_functionkinase activity
A0016740molecular_functiontransferase activity
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0004550molecular_functionnucleoside diphosphate kinase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006163biological_processpurine nucleotide metabolic process
B0006183biological_processGTP biosynthetic process
B0006220biological_processpyrimidine nucleotide metabolic process
B0006228biological_processUTP biosynthetic process
B0006241biological_processCTP biosynthetic process
B0009117biological_processnucleotide metabolic process
B0016301molecular_functionkinase activity
B0016740molecular_functiontransferase activity
B0046872molecular_functionmetal ion binding
C0000166molecular_functionnucleotide binding
C0004550molecular_functionnucleoside diphosphate kinase activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0006163biological_processpurine nucleotide metabolic process
C0006183biological_processGTP biosynthetic process
C0006220biological_processpyrimidine nucleotide metabolic process
C0006228biological_processUTP biosynthetic process
C0006241biological_processCTP biosynthetic process
C0009117biological_processnucleotide metabolic process
C0016301molecular_functionkinase activity
C0016740molecular_functiontransferase activity
C0046872molecular_functionmetal ion binding
D0000166molecular_functionnucleotide binding
D0004550molecular_functionnucleoside diphosphate kinase activity
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0006163biological_processpurine nucleotide metabolic process
D0006183biological_processGTP biosynthetic process
D0006220biological_processpyrimidine nucleotide metabolic process
D0006228biological_processUTP biosynthetic process
D0006241biological_processCTP biosynthetic process
D0009117biological_processnucleotide metabolic process
D0016301molecular_functionkinase activity
D0016740molecular_functiontransferase activity
D0046872molecular_functionmetal ion binding
E0000166molecular_functionnucleotide binding
E0004550molecular_functionnucleoside diphosphate kinase activity
E0005524molecular_functionATP binding
E0005737cellular_componentcytoplasm
E0006163biological_processpurine nucleotide metabolic process
E0006183biological_processGTP biosynthetic process
E0006220biological_processpyrimidine nucleotide metabolic process
E0006228biological_processUTP biosynthetic process
E0006241biological_processCTP biosynthetic process
E0009117biological_processnucleotide metabolic process
E0016301molecular_functionkinase activity
E0016740molecular_functiontransferase activity
E0046872molecular_functionmetal ion binding
F0000166molecular_functionnucleotide binding
F0004550molecular_functionnucleoside diphosphate kinase activity
F0005524molecular_functionATP binding
F0005737cellular_componentcytoplasm
F0006163biological_processpurine nucleotide metabolic process
F0006183biological_processGTP biosynthetic process
F0006220biological_processpyrimidine nucleotide metabolic process
F0006228biological_processUTP biosynthetic process
F0006241biological_processCTP biosynthetic process
F0009117biological_processnucleotide metabolic process
F0016301molecular_functionkinase activity
F0016740molecular_functiontransferase activity
F0046872molecular_functionmetal ion binding
G0000166molecular_functionnucleotide binding
G0004550molecular_functionnucleoside diphosphate kinase activity
G0005524molecular_functionATP binding
G0005737cellular_componentcytoplasm
G0006163biological_processpurine nucleotide metabolic process
G0006183biological_processGTP biosynthetic process
G0006220biological_processpyrimidine nucleotide metabolic process
G0006228biological_processUTP biosynthetic process
G0006241biological_processCTP biosynthetic process
G0009117biological_processnucleotide metabolic process
G0016301molecular_functionkinase activity
G0016740molecular_functiontransferase activity
G0046872molecular_functionmetal ion binding
H0000166molecular_functionnucleotide binding
H0004550molecular_functionnucleoside diphosphate kinase activity
H0005524molecular_functionATP binding
H0005737cellular_componentcytoplasm
H0006163biological_processpurine nucleotide metabolic process
H0006183biological_processGTP biosynthetic process
H0006220biological_processpyrimidine nucleotide metabolic process
H0006228biological_processUTP biosynthetic process
H0006241biological_processCTP biosynthetic process
H0009117biological_processnucleotide metabolic process
H0016301molecular_functionkinase activity
H0016740molecular_functiontransferase activity
H0046872molecular_functionmetal ion binding
I0000166molecular_functionnucleotide binding
I0004550molecular_functionnucleoside diphosphate kinase activity
I0005524molecular_functionATP binding
I0005737cellular_componentcytoplasm
I0006163biological_processpurine nucleotide metabolic process
I0006183biological_processGTP biosynthetic process
I0006220biological_processpyrimidine nucleotide metabolic process
I0006228biological_processUTP biosynthetic process
I0006241biological_processCTP biosynthetic process
I0009117biological_processnucleotide metabolic process
I0016301molecular_functionkinase activity
I0016740molecular_functiontransferase activity
I0046872molecular_functionmetal ion binding
J0000166molecular_functionnucleotide binding
J0004550molecular_functionnucleoside diphosphate kinase activity
J0005524molecular_functionATP binding
J0005737cellular_componentcytoplasm
J0006163biological_processpurine nucleotide metabolic process
J0006183biological_processGTP biosynthetic process
J0006220biological_processpyrimidine nucleotide metabolic process
J0006228biological_processUTP biosynthetic process
J0006241biological_processCTP biosynthetic process
J0009117biological_processnucleotide metabolic process
J0016301molecular_functionkinase activity
J0016740molecular_functiontransferase activity
J0046872molecular_functionmetal ion binding
K0000166molecular_functionnucleotide binding
K0004550molecular_functionnucleoside diphosphate kinase activity
K0005524molecular_functionATP binding
K0005737cellular_componentcytoplasm
K0006163biological_processpurine nucleotide metabolic process
K0006183biological_processGTP biosynthetic process
K0006220biological_processpyrimidine nucleotide metabolic process
K0006228biological_processUTP biosynthetic process
K0006241biological_processCTP biosynthetic process
K0009117biological_processnucleotide metabolic process
K0016301molecular_functionkinase activity
K0016740molecular_functiontransferase activity
K0046872molecular_functionmetal ion binding
L0000166molecular_functionnucleotide binding
L0004550molecular_functionnucleoside diphosphate kinase activity
L0005524molecular_functionATP binding
L0005737cellular_componentcytoplasm
L0006163biological_processpurine nucleotide metabolic process
L0006183biological_processGTP biosynthetic process
L0006220biological_processpyrimidine nucleotide metabolic process
L0006228biological_processUTP biosynthetic process
L0006241biological_processCTP biosynthetic process
L0009117biological_processnucleotide metabolic process
L0016301molecular_functionkinase activity
L0016740molecular_functiontransferase activity
L0046872molecular_functionmetal ion binding
Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDPK Nucleoside diphosphate kinase (NDPK) active site signature. NaiHASDSP
ChainResidueDetails
AASN117-PRO125

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsActive site: {"description":"Pros-phosphohistidine intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_00451","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues72
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00451","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon